Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2119 ATGAATCTAATGTGTCTGAGGAGAATGGTCTATAACAAATTAAATATTGGAGGTTACATCATCAAACTAGATGCTCTCAACGAGATTATTTCCTTTGCCTCTGGCTTCCCTGGCTCCGAAGGCGAGGCAGTTGATCTTGTTCTCGCCAGTCTCAATCACAAATCATGTACTACTACATTTCCTTTTTTCTTTCATACTGCAATTGTAACATTTTCTCAGCAATTCACTTCATTCTTTCTCATGGACAATTTCTTTGTTTTTGTTTCCATGGCAGTACAATCTTTGATATTAGACAGCGATGTGGTGCATAGGGTTGTTAGCATTCTTGCAAGCGATGAAGTGGGAAAAGAAAGTCTCGATACCATTACTAGTACATCTGCTCTTTGCATCATAGACGCTTTTGATATCTCGAAGTTTCGTTATAATCCCATCAAGAAGATCTTCCACCTGGACACAGGAAATCTTCCATATCATGGGGATGGTAACGCTAAAGCTGCTTTGTATAGAGATAGGTTTCTCCTGCTTTCCCAACTGCTCTCCCGGAATCAACATTTCTCCAAGCCTGCTTTTGACACCAGCATGTCTCACTTTCGAAGTTGTGAGATTTCTCCTATTCAGTCTCTAGTGGGGCAAGGAGGGAGGAAATGGGTCATGGGATTGATCTCTCAGATGGAGGATGGTCACTTTTACTTGGAGGACTTTACTGCGTCTGTGGAAATAAATTTAACTAATGCCATATCCTTTACTGACTTCTTCTATAGTCACAAGATAACTACAGGTCTATTTACAGAGAACACCATCGTTGTAGCAGAAGGAGAGATGCTTGTGGAGGGCATTTTTCAGATGTCCAGCACTTGTTTCATAGAAGTATTTCAAATATTGTTCTTCATGTTACTAATGTTTTTTTTTCCCTTCTTCTTTTGCATCTATTTTGTTAAGGTTATTACATGTGGATTTCCTCCATTAGAGGACAGGGACAAGTCTCTTAAATTCATAGCAGGCCAGGACTTCTTTGGTGGTGGTGCTTTAACTAAGGAGGAGACTTTCAGGCTTGCAGATCTGGCAAAGAGAGCCGCTAATGATATGTTTGTCGTACTCTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATTCTTGATAGTTTTGAAAATGTAGATGTGGTTCCTTCCTTATTTGTTTTGATGGGGAATTTTTGTTCCCGTCCATGTAATCTTGCCTTTAATTCTTTCTCAAGCCTAAGACTACAATTTGGAAAGCTAGGAAAAATGATAGCAGCTCATCCACGATTAAAAGAACATAGCAAGTTTCTTTTTATTCCGGGTCCAGATGATGCAGGTCCATCAACAGTTCTACCTAGGTGTGCTTTGCCAAAGTATTTAACCAAAGAGCTTCAGATGCATGTCCCAAATGCCATCTTCTCAAGTAACCCTTGCAGGGTCAGTCATCTCTGCCCTCTTCCTCTGGTTGTTCAACCAGTTAGCTGGAATTATGACCACTGTCTCCATCTTTTTCCAACTCCTCATGTGATAGTTCTGGGGGATGCAAGTAAGCAACAGGCATTCAAATACAGAGGAATCACTTGCTTCAATCCTGGTTCTTTCACAAATGACAACACTTTTGCGGCATATCGTCCGTGCAATCAAGAAGTTGAATTATTAGCACCTTTTAAATCATGA 1692 40.54 MNLMCLRRMVYNKLNIGGYIIKLDALNEIISFASGFPGSEGEAVDLVLASLNHKSCTTTFPFFFHTAIVTFSQQFTSFFLMDNFFVFVSMAVQSLILDSDVVHRVVSILASDEVGKESLDTITSTSALCIIDAFDISKFRYNPIKKIFHLDTGNLPYHGDGNAKAALYRDRFLLLSQLLSRNQHFSKPAFDTSMSHFRSCEISPIQSLVGQGGRKWVMGLISQMEDGHFYLEDFTASVEINLTNAISFTDFFYSHKITTGLFTENTIVVAEGEMLVEGIFQMSSTCFIEVFQILFFMLLMFFFPFFFCIYFVKVITCGFPPLEDRDKSLKFIAGQDFFGGGALTKEETFRLADLAKRAANDMFVVLSDIWLDSEEAMGKLETILDSFENVDVVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGKLGKMIAAHPRLKEHSKFLFIPGPDDAGPSTVLPRCALPKYLTKELQMHVPNAIFSSNPCRVSHLCPLPLVVQPVSWNYDHCLHLFPTPHVIVLGDASKQQAFKYRGITCFNPGSFTNDNTFAAYRPCNQEVELLAPFKS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42206451 42212735 - Maker00028208 Lcy2g2119 626884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2119 563 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 6 485 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0006261(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0042276(PANTHER)
Lcy2g2119 563 PIRSF DNA_pol_epsilon_2 3 290 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0008622(InterPro)
Lcy2g2119 563 PIRSF DNA_pol_epsilon_2 485 560 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0008622(InterPro)
Lcy2g2119 563 PIRSF DNA_pol_epsilon_2 307 486 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0008622(InterPro)
Lcy2g2119 563 Gene3D - 368 555 - -
Lcy2g2119 563 Pfam DNA polymerase alpha/epsilon subunit B 363 486 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2119 Lcy-Chr2:42206451 Lcy3g0749 Lcy-Chr3:26969692 1.93E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2119 K02325 - csv:101207444 719.924