Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g2121 | ATGTCCAAAATCTCAAGGTGTTCTGATGATGGTGGGAGCTTGGTGTCTGAAGGTGAGAAATTAGGGAATCAGTTCAGCCATGGAAGCTCTCAATCCCATCAGCAGCCTCAGCTTGCAGCTCCCAAAAAGAAAAGGAACTTACCAGGAACACCAGACCCGGATGCAGAAGTGGTAGCGCTATCTCCCGAAACCCTAATGGCAACGAATAGGTTTGTGTGTGAAATATGCAATAAGGGATTTCAAAGAGACCAGAACTTGCAGCTGCACAGGCGAGGGCACAACCTGCCATGGAAGCTGAAGCAGCGGACGAGTGGGAGCGAGACAAGAAGGAAGGTGTACGTGTGCCCGGAAACGTCGTGCGTCCACCACAATCCGGCGAGGGCGCTCGGAGACCTCACTGGAATCAAGAAACATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAGAAATGCTCCAAAAAATATGCTGTTCAATCCGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGGAGAGACAGCTTCATCACCCACAGAGCATTTTGCGATGCCTTAACAGAAGAAAACAACAAGCTAGCTCGTCAAGGAGCAACAATGGCTTCCACCGCCATTAATGCACCTCCCTTTCAACCTCAACAGCTTCCTCACCTTCTCTCTCAACCTTCCCTCCCCTCGCCGCCATTAACACTGCCCCACGACCTCATGCCTATCCCTCCAAAGCCCTTGAACCTATCTGCCGGATCCATGTTTTCATCCTCCATTTCCAACAACTCCGCCACCTCCGATCAAAACGACCACCAGTTTCCCTCCTCCTCCGCCCTCATGTCCGCCACTGCACTGCTGCAGAAGGCAGCACAGATGGGAGCTGTCGTGAGCGGGGGCGGAAACCACCCCGCCACTTGTTTGAGCTCTCCCATTATCCAGCAGAAGAAGGGCTACGTTACAACAATGGCTCCTTCTTCCTTCGGCGGGCTGCTGTCCACCACCTATTTGCAGAAATGTCCTCAAGGAAATATTTCATCGTCTCAGCTGCATTCCAATGGCGGAGCTATGGACATGGAGATGATCGGCGACATTCCGATGCTGAACGGAGTGCTGGATCAGCCGCTGGTGGAGGCGGCGAGGAAGACGATGACACTGGATTTGTTGGGGGCTGAGGGAGGGAAGGGGAGGAACTTTCAGGCGCCAGAAAGTGTGGGATTTGGAGGGCTTATGGAGAATATGAGTTACTTTCGACACCAAGGGACCATGGGAAGGCAGACATGGGAGATTTGA | 1317 | 51.94 | MSKISRCSDDGGSLVSEGEKLGNQFSHGSSQSHQQPQLAAPKKKRNLPGTPDPDAEVVALSPETLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETRRKVYVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLARQGATMASTAINAPPFQPQQLPHLLSQPSLPSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISNNSATSDQNDHQFPSSSALMSATALLQKAAQMGAVVSGGGNHPATCLSSPIIQQKKGYVTTMAPSSFGGLLSTTYLQKCPQGNISSSQLHSNGGAMDMEMIGDIPMLNGVLDQPLVEAARKTMTLDLLGAEGGKGRNFQAPESVGFGGLMENMSYFRHQGTMGRQTWEI | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 42314412 | 42321245 | + | Maker00027955 | Lcy2g2121 | 626886 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g2121 | 438 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Lcy2g2121 | 438 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 147 | 171 | - | - | |
Lcy2g2121 | 438 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 174 | 211 | - | - | |
Lcy2g2121 | 438 | Pfam | Zinc finger, C2H2 type | 71 | 93 | IPR013087 | - | |
Lcy2g2121 | 438 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 93 | IPR013087 | - | |
Lcy2g2121 | 438 | SUPERFAMILY | beta-beta-alpha zinc fingers | 70 | 168 | IPR036236 | - | |
Lcy2g2121 | 438 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 109 | 143 | - | - | |
Lcy2g2121 | 438 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 126 | 205 | - | - | |
Lcy2g2121 | 438 | Gene3D | Classic Zinc Finger | 126 | 206 | - | - | |
Lcy2g2121 | 438 | Gene3D | Classic Zinc Finger | 49 | 121 | - | - | |
Lcy2g2121 | 438 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - | |
Lcy2g2121 | 438 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
Lcy2g2121 | 438 | SMART | c2h2final6 | 148 | 168 | IPR013087 | - | |
Lcy2g2121 | 438 | SMART | c2h2final6 | 113 | 143 | IPR013087 | - | |
Lcy2g2121 | 438 | FunFam | protein indeterminate-domain 12-like | 50 | 119 | - | - | |
Lcy2g2121 | 438 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 148 | 176 | IPR013087 | - | |
Lcy2g2121 | 438 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 30 | 403 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy2g2121 | 438 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g2121 | Lcy-Chr2:42314412 | Lcy9g2183 | Lcy-Chr9:46486329 | 1.01E-99 | dispersed | |
Lcy3g1706 | Lcy-Chr3:44369158 | Lcy2g2121 | Lcy-Chr2:42314412 | 6.23E-107 | transposed | |
Lcy2g2121 | Lcy-Chr2:42314412 | Lcy5g1135 | Lcy-Chr5:24245473 | 1.52E-18 | wgd | |
Lcy2g2121 | Lcy-Chr2:42314412 | Lcy7g1523 | Lcy-Chr7:27211414 | 2.91E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19783 | None | None | None | None | Lcy | TF |
Pathway information
