Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2121 ATGTCCAAAATCTCAAGGTGTTCTGATGATGGTGGGAGCTTGGTGTCTGAAGGTGAGAAATTAGGGAATCAGTTCAGCCATGGAAGCTCTCAATCCCATCAGCAGCCTCAGCTTGCAGCTCCCAAAAAGAAAAGGAACTTACCAGGAACACCAGACCCGGATGCAGAAGTGGTAGCGCTATCTCCCGAAACCCTAATGGCAACGAATAGGTTTGTGTGTGAAATATGCAATAAGGGATTTCAAAGAGACCAGAACTTGCAGCTGCACAGGCGAGGGCACAACCTGCCATGGAAGCTGAAGCAGCGGACGAGTGGGAGCGAGACAAGAAGGAAGGTGTACGTGTGCCCGGAAACGTCGTGCGTCCACCACAATCCGGCGAGGGCGCTCGGAGACCTCACTGGAATCAAGAAACATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAGAAATGCTCCAAAAAATATGCTGTTCAATCCGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGGAGAGACAGCTTCATCACCCACAGAGCATTTTGCGATGCCTTAACAGAAGAAAACAACAAGCTAGCTCGTCAAGGAGCAACAATGGCTTCCACCGCCATTAATGCACCTCCCTTTCAACCTCAACAGCTTCCTCACCTTCTCTCTCAACCTTCCCTCCCCTCGCCGCCATTAACACTGCCCCACGACCTCATGCCTATCCCTCCAAAGCCCTTGAACCTATCTGCCGGATCCATGTTTTCATCCTCCATTTCCAACAACTCCGCCACCTCCGATCAAAACGACCACCAGTTTCCCTCCTCCTCCGCCCTCATGTCCGCCACTGCACTGCTGCAGAAGGCAGCACAGATGGGAGCTGTCGTGAGCGGGGGCGGAAACCACCCCGCCACTTGTTTGAGCTCTCCCATTATCCAGCAGAAGAAGGGCTACGTTACAACAATGGCTCCTTCTTCCTTCGGCGGGCTGCTGTCCACCACCTATTTGCAGAAATGTCCTCAAGGAAATATTTCATCGTCTCAGCTGCATTCCAATGGCGGAGCTATGGACATGGAGATGATCGGCGACATTCCGATGCTGAACGGAGTGCTGGATCAGCCGCTGGTGGAGGCGGCGAGGAAGACGATGACACTGGATTTGTTGGGGGCTGAGGGAGGGAAGGGGAGGAACTTTCAGGCGCCAGAAAGTGTGGGATTTGGAGGGCTTATGGAGAATATGAGTTACTTTCGACACCAAGGGACCATGGGAAGGCAGACATGGGAGATTTGA 1317 51.94 MSKISRCSDDGGSLVSEGEKLGNQFSHGSSQSHQQPQLAAPKKKRNLPGTPDPDAEVVALSPETLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETRRKVYVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLARQGATMASTAINAPPFQPQQLPHLLSQPSLPSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISNNSATSDQNDHQFPSSSALMSATALLQKAAQMGAVVSGGGNHPATCLSSPIIQQKKGYVTTMAPSSFGGLLSTTYLQKCPQGNISSSQLHSNGGAMDMEMIGDIPMLNGVLDQPLVEAARKTMTLDLLGAEGGKGRNFQAPESVGFGGLMENMSYFRHQGTMGRQTWEI 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42314412 42321245 + Maker00027955 Lcy2g2121 626886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2121 438 MobiDBLite consensus disorder prediction 1 53 - -
Lcy2g2121 438 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 147 171 - -
Lcy2g2121 438 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 174 211 - -
Lcy2g2121 438 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Lcy2g2121 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lcy2g2121 438 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Lcy2g2121 438 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 109 143 - -
Lcy2g2121 438 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Lcy2g2121 438 Gene3D Classic Zinc Finger 126 206 - -
Lcy2g2121 438 Gene3D Classic Zinc Finger 49 121 - -
Lcy2g2121 438 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lcy2g2121 438 SMART c2h2final6 71 93 IPR013087 -
Lcy2g2121 438 SMART c2h2final6 148 168 IPR013087 -
Lcy2g2121 438 SMART c2h2final6 113 143 IPR013087 -
Lcy2g2121 438 FunFam protein indeterminate-domain 12-like 50 119 - -
Lcy2g2121 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
Lcy2g2121 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 403 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy2g2121 438 MobiDBLite consensus disorder prediction 19 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2121 Lcy-Chr2:42314412 Lcy9g2183 Lcy-Chr9:46486329 1.01E-99 dispersed
Lcy3g1706 Lcy-Chr3:44369158 Lcy2g2121 Lcy-Chr2:42314412 6.23E-107 transposed
Lcy2g2121 Lcy-Chr2:42314412 Lcy5g1135 Lcy-Chr5:24245473 1.52E-18 wgd
Lcy2g2121 Lcy-Chr2:42314412 Lcy7g1523 Lcy-Chr7:27211414 2.91E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19783 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2121 - - - 0.0