Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g2216 | ATGATGCTCCACGACACTGAAACTCGAAGACCCACTGCGAGAACCGCCGAAAATGAAGCAAAACGCTTGCTGAATGGAAAGGAAAGTGAATGGGTGTTGTTGGCTACAAGGCGTGATTCTCTTATCATAGAAGAAGTCCTTTTGCGTCCTCCCTTCCTTGACAGGGGAACATTTCTTGGTATCAAAAGACACATCATACATCACTGTTACAATATTTTCAAACCTTATGATGATGATGATGAAGATTTGCTCTCTTCAAGTGATGAAAGAAACGAGTCGAGTGTTACTGAGGAAAGTGAAACTTCTTATCATGGAAGGGAGATGGAACTTCAGCGTCGCTCCCCTCGTTGCGTTTTTCTCCCGCCGACCAGCACCCCCGCGCCACCGCTGCTGCTCCAGTCGCCGCCGCCAGTGGTTGAAGCCGTCGCCCTGCCTCCCGTCGTGCTGCTGTCTGTCCAGCTCGCGCCGTGGTTGTCGTCTCTCCCTCCCGCGTGTCCAGCCGCCGCCGTTCGAGCCCCCGCCGTCGCCGTTTTCGTCCCAGCTCGAGCAACCGTGAAGCCCAGCCGCCGTGAAGGTCGCCGCCAGCCCCAAGGTAGCTTGTGGATCTCGCGTCTTAGCAGCTCGAAGCCTCAGTTCCGCGCGATTTCGCCTCTGTGCAGCGGTGTTTTGGGTCCGTTTTGGATCGTTACGACATCGCTTAACGTCTCCGCACCGCCTAAGTGTTCGATTGAGTTCGAATCACTTAAGTTCGATCACCCACTGCCCAAGGAGCGTTCTAGCACGCTGTTCGAGGTTAGAATAACCCGTCTAGCGCAAAAGCGGACCCGTTTGGGAGCATTTGAGGTAAGTGGAATTCTACTTGTTGAGTCTGGTTGCTTGTGTGCTCGTATGCTATGTGCTTTGCTCCTTGGTTTTATTGTGCCTCGAGTAAAAATGGTCGAGGGGTGGTATGTCACCAATGGATTAGGTGGAGCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATATATTGTGAAAGTCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGTAAAAATGGTCAAGGGTTGAATGCCGAGCTCCGTAGAGAGCATTGTGGTCCTGGGTACAAATGGTCAGGGGACAGTGCGGCTCGAAGGGTCAGTCTTGGAGAGCTTTATGAAGGCTATGAGAAATTGAAGTCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGTGTGAGCCACTTACTCAGTACCGCTGTATTGTACTGATCCACCACCAGATTTTTGCAGGTTATGAGACCATATCTGGACTTGGTGATGAGGAGGAGGCTTGGAAGAGGAGACCATTAGATAGTACTGTAGCGAAAATGGTTAACGAAGTGGTTGAGAATGGAGTAAGCGATATGGTAATTGATGGTAACGAACAAAAGCCGAAGAAAATTGTGCCTGATGGGTTCGATGCTAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTATACTGATTTTTTCAAATGGATGTCTTATGGAAATGATGGAAAGCATCCAGGCAGTGACCGATCCTATTTTGGCCGAAGAGAGTTCTCATTCACGTTGGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTTTGTCTGAAATGGAAAATTCGATCAAGGAAAAGTGTCCGTTTAAGATTGATATTGGGTCTGTATACAGCGTGGATCCTGCAAAGAGACACGCATATGCTGGTGATAATGTATTTACTCCAGTGGAGAGAGAGCTTGTTTTTGATATAGATATGACTGATTATGATGATGTTAGATATTGTTGTTCAGGAGCTGATGTTTGCTTGGATTGCTGGCCTTTAATGACTGTTGCTATCAAAGTGATTGATACTACCCTCAGAGATGACTTTGGATTTAACCACATATTGTGGGTATTTAGTGGTCGACGTGGTGTTCACTGTTGGGTCTGTGATGGCAAAGCAAGAAGGTTGTCTAATGAACAGAGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAACGAAAATAGTCGCAAGAAAATTTCACTAACGAGTCCAGTTCTTCATCCATTTCTCGCGAGATCATACATAGAAGTTCTCGAGGATTGCTTTGAATCAAAATTGCTTCGTAGTCAAAAATTTTTCTCAACTGAGGAGAGATATGAGAAAATCTTAGATATGATTCATGATGAATCCATTACCTCAGAGTTTCGTGGAAGGTGGCAAGAGAATAGGCGTCCCTCTAAAAAAGATGTTAATTCCGTAAGATGGGAGCAACTAAAAAATATGTTGCAATCAGGGAAACATAAGAATAGAATTGGAGTAGAAACTGTTTTGAAACTTAAAGGACAAGAAATACTAAAATATCCCAGCCATTCTTACGGGTTCACACCGGAGAACACAGGGATCTCCAATTTCCGAAGTCGTAGGTTGAAAACAGGGGCCAGCGCCTTGGTTAATGCTTGCGGATCAACGGCTTCGACTTCCATGGGATTCGCTGCACTAGTCGCTTCATCGGACTTTCGAGAACAGAAAGAAATGAGTACCAACCTCTTTGTAGCTCAAATGAGATGGTCTCCTTGTGGTGTTTTCTTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATTCTCCGGGCCAAGAACGACTTGTGGGAGTCTATAGTGATAGGGAATGGGAAGGGAATGCTTAGAGAATCCATGCAAGAAGGGGCTTCAAGATGCAAGACACATGGTGGTCTTCATGGAGAAAGTGGAAGCTAG | 2832 | 46.61 | MMLHDTETRRPTARTAENEAKRLLNGKESEWVLLATRRDSLIIEEVLLRPPFLDRGTFLGIKRHIIHHCYNIFKPYDDDDEDLLSSSDERNESSVTEESETSYHGREMELQRRSPRCVFLPPTSTPAPPLLLQSPPPVVEAVALPPVVLLSVQLAPWLSSLPPACPAAAVRAPAVAVFVPARATVKPSRREGRRQPQGSLWISRLSSSKPQFRAISPLCSGVLGPFWIVTTSLNVSAPPKCSIEFESLKFDHPLPKERSSTLFEVRITRLAQKRTRLGAFEVSGILLVESGCLCARMLCALLLGFIVPRVKMVEGWYVTNGLGGASGALGNMAKGRCDESIYCESHRVPWVIWPRGDAQFEALGKNGQGLNAELRREHCGPGYKWSGDSAARRVSLGELYEGYEKLKSSGALGNMAKGRCTVRGLGCEPLTQYRCIVLIHHQIFAGYETISGLGDEEEAWKRRPLDSTVAKMVNEVVENGVSDMVIDGNEQKPKKIVPDGFDANYLKIYYGKLFPYTDFFKWMSYGNDGKHPGSDRSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGSVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTVAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTSPVLHPFLARSYIEVLEDCFESKLLRSQKFFSTEERYEKILDMIHDESITSEFRGRWQENRRPSKKDVNSVRWEQLKNMLQSGKHKNRIGVETVLKLKGQEILKYPSHSYGFTPENTGISNFRSRRLKTGASALVNACGSTASTSMGFAALVASSDFREQKEMSTNLFVAQMRWSPCGVFFSYAPWTTSRVFPTILRAKNDLWESIVIGNGKGMLRESMQEGASRCKTHGGLHGESGS | 943 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 45770390 | 45787762 | - | Maker00028059 | Lcy2g2216 | 626981 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g2216 | 943 | NCBIfam | eukaryotic-type DNA primase catalytic subunit PriS | 507 | 800 | IPR014052 | GO:0003896(InterPro)|GO:0006269(InterPro) | |
| Lcy2g2216 | 943 | Gene3D | DNA primase, PRIM domain | 495 | 810 | - | - | |
| Lcy2g2216 | 943 | Pfam | DNA primase small subunit | 608 | 756 | IPR002755 | GO:0003896(InterPro)|GO:0006269(InterPro) | |
| Lcy2g2216 | 943 | MobiDBLite | consensus disorder prediction | 87 | 107 | - | - | |
| Lcy2g2216 | 943 | SUPERFAMILY | Prim-pol domain | 503 | 750 | - | - | |
| Lcy2g2216 | 943 | CDD | AE_Prim_S | 515 | 720 | IPR014052 | GO:0003896(InterPro)|GO:0006269(InterPro) | |
| Lcy2g2216 | 943 | PANTHER | DNA PRIMASE SMALL SUBUNIT | 430 | 794 | - | GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER) | |
| Lcy2g2216 | 943 | MobiDBLite | consensus disorder prediction | 82 | 107 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy9g0557 | Lcy-Chr9:17831174 | 2.02E-48 | dispersed | |
| Lcy3g0537 | Lcy-Chr3:20165749 | Lcy2g2216 | Lcy-Chr2:45770390 | 3.81E-17 | dispersed | |
| Lcy7g1034 | Lcy-Chr7:11035575 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.23E-13 | dispersed | |
| Lcy7g1332 | Lcy-Chr7:19449398 | Lcy2g2216 | Lcy-Chr2:45770390 | 4.80E-11 | dispersed | |
| Lcy7g1563 | Lcy-Chr7:29319223 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.26E-06 | dispersed | |
| Lcy9g0571 | Lcy-Chr9:18495253 | Lcy2g2216 | Lcy-Chr2:45770390 | 1.05E-11 | dispersed | |
| Lcy1g2573 | Lcy-Chr1:47518001 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.06E-13 | wgd | |
| Lcy1g2609 | Lcy-Chr1:48432496 | Lcy2g2216 | Lcy-Chr2:45770390 | 9.27E-12 | wgd | |
| Lcy1g2711 | Lcy-Chr1:52687240 | Lcy2g2216 | Lcy-Chr2:45770390 | 1.73E-27 | wgd | |
| Lcy1g1948 | Lcy-Chr1:23300506 | Lcy2g2216 | Lcy-Chr2:45770390 | 6.87E-48 | wgd | |
| Lcy10g0373 | Lcy-Chr10:7735101 | Lcy2g2216 | Lcy-Chr2:45770390 | 1.28E-10 | wgd | |
| Lcy10g0386 | Lcy-Chr10:8034380 | Lcy2g2216 | Lcy-Chr2:45770390 | 3.50E-42 | wgd | |
| Lcy10g0675 | Lcy-Chr10:19733178 | Lcy2g2216 | Lcy-Chr2:45770390 | 6.60E-10 | wgd | |
| Lcy10g0462 | Lcy-Chr10:10950406 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.06E-28 | wgd | |
| Lcy11g0600 | Lcy-Chr11:15186393 | Lcy2g2216 | Lcy-Chr2:45770390 | 1.03E-22 | wgd | |
| Lcy11g0563 | Lcy-Chr11:13793289 | Lcy2g2216 | Lcy-Chr2:45770390 | 1.40E-17 | wgd | |
| Lcy11g0932 | Lcy-Chr11:28298545 | Lcy2g2216 | Lcy-Chr2:45770390 | 6.26E-23 | wgd | |
| Lcy11g0610 | Lcy-Chr11:15541294 | Lcy2g2216 | Lcy-Chr2:45770390 | 4.85E-08 | wgd | |
| Lcy12g0911 | Lcy-Chr12:13348506 | Lcy2g2216 | Lcy-Chr2:45770390 | 1.84E-29 | wgd | |
| Lcy12g1357 | Lcy-Chr12:30316742 | Lcy2g2216 | Lcy-Chr2:45770390 | 9.33E-18 | wgd | |
| Lcy13g1291 | Lcy-Chr13:30209035 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.85E-12 | wgd | |
| Lcy13g0817 | Lcy-Chr13:13262706 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.43E-15 | wgd | |
| Lcy2g1774 | Lcy-Chr2:28534429 | Lcy2g2216 | Lcy-Chr2:45770390 | 1.89E-24 | wgd | |
| Lcy2g1693 | Lcy-Chr2:25440479 | Lcy2g2216 | Lcy-Chr2:45770390 | 5.49E-10 | wgd | |
| Lcy2g2006 | Lcy-Chr2:37894464 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.15E-23 | wgd | |
| Lcy2g2056 | Lcy-Chr2:39569757 | Lcy2g2216 | Lcy-Chr2:45770390 | 2.11E-26 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy3g0132 | Lcy-Chr3:3336426 | 1.59E-10 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy4g1400 | Lcy-Chr4:34403697 | 7.31E-25 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy4g1043 | Lcy-Chr4:19006332 | 3.58E-17 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy4g0915 | Lcy-Chr4:14544426 | 9.88E-09 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy4g0822 | Lcy-Chr4:10485380 | 2.60E-06 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy4g0907 | Lcy-Chr4:14332023 | 3.89E-07 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy5g0965 | Lcy-Chr5:17206117 | 1.05E-10 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy5g1048 | Lcy-Chr5:20610822 | 1.25E-08 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy5g1252 | Lcy-Chr5:29383576 | 1.35E-22 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy5g0843 | Lcy-Chr5:13541626 | 6.97E-20 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy5g0907 | Lcy-Chr5:15421041 | 1.63E-21 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy6g1475 | Lcy-Chr6:22988978 | 1.14E-10 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy7g1612 | Lcy-Chr7:31425922 | 1.60E-92 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy7g1827 | Lcy-Chr7:40744694 | 2.95E-15 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy7g1658 | Lcy-Chr7:32669999 | 1.30E-20 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy7g1513 | Lcy-Chr7:26842060 | 1.44E-22 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy7g1496 | Lcy-Chr7:26096844 | 6.70E-16 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy8g0599 | Lcy-Chr8:20712236 | 1.62E-09 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy8g0471 | Lcy-Chr8:15389040 | 5.67E-21 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy8g0179 | Lcy-Chr8:4246344 | 2.48E-65 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy9g0348 | Lcy-Chr9:9464498 | 7.00E-229 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy9g0463 | Lcy-Chr9:13266373 | 3.79E-07 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy9g0430 | Lcy-Chr9:12063436 | 3.94E-28 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy9g0568 | Lcy-Chr9:18452702 | 3.97E-21 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy9g0718 | Lcy-Chr9:24435011 | 3.47E-19 | wgd | |
| Lcy2g2216 | Lcy-Chr2:45770390 | Lcy9g0893 | Lcy-Chr9:29906555 | 1.68E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy2g2216 | K02684 | - | csv:101203146 | 602.823 |