Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2224 ATGAGTTATAGGGATGATGATGCTCAGAACAAGAAAAGATACGCCATCATCGGCGTGTCGTCGATGTTACTCGTGGCGATGGTGGTGGCGGTGACGGTTGGCGTTAACCTAAACCAGGACGAAACGACCGATCCGGCAACGGGAAACAAGTCCCATGAAATATCTTCTTCTGTGAAACTGATTAAAGACATTTGCCAACCTACTGATTACAAACAAGAATGTGTTGAAAGCCTCAAGTCTGCTGGCACTTCGGATCCCAAGGAATTGGTTCAAGCTGGCTTCAAGGCTGCCGTGAAATTGATCCAAGCCGCTGCTAATAAATCTATCACCTTGAAAGAGATTGAGAAAGACCCTAGAGCCTCCAAAGCCCTCGCTGGTTGCAAGGAGCTCATGGATTTCGCCATCGAGGAGCTTAAATGGTCGATCAAGAGACTCGGCGAGTTTGATATTACCAAACTCGACGAGATGTTGATTGACATTAAGATCTGGCTCAGCGCCACCATTACCTATCAGGAAACTTGCTTGGATGGGTTCGAGAACACGACGGGAAATGCGGCGGAGAAGATGAAGAAGGCATTGAAGACGTCGATGAGAGTGAGCAGCAATGGGTTGGCGATGGTGACGCAAATCTCGTCGATGTTGACGGATTTGCAAATTCCGGGGATCAACCGACGAAGACTTCTGGATATTCCAGTTCTTGGGCACGACGATTACCCCGACTGGGCGAACCCCGGGATGCGGCGACTCCTTGCGGCGAAGGGGAAGCCCAACATCGTGGTGGCCAAGGATGGAAGTGGGCAGTACAAGACCATTCAAGAGGCTCTGAACAGAGTCCCAAAGAGGAAGAACAACCAAACATTTGTGATTCACATCAAGCAAGGAGTGTACAAGGAATACCTGACCATCAACAAAACCCTCACCCATTTGATGCTCATTGGCGATGGCCCCAAAAAGACCATCATCTCTGGAAACAAGAACTTTATTGATGGCACTCCCACCTTCAAAACTGCAACTGTTGCTGTGACAGCGGAGCACTTCATGGCCAGAGACATCGGGTTCGAGAACACGGCAGGCCCAGAGAAGCACCAAGCAGTGGCATTGCGAGTCCAAGCCGACAAAGCCGTATTCTACAACTGCGAGATGCATGGCTACCAAGACACTCTCTACGTCCACACCATGCGCCAATTCTACCGGGACTGCGTCGTCTCCGGCACCATCGACTTCGTCTTCGGGGACGCGGCCGCCGTCTTCCAAGGCTGCACCTTCCTGGTGCGCAAGCCCCTTCCAAACCAACAATGCATCGTCACGGCCCACGGGCGCAAGGAGAGGCGGCAGCCCTCCGCCCTCATCATCCAGAACTCCTCCTTCAAGCCCGACACCGACCTCGTCCCGGTGAAAAAGCAGTTCCGATCCTACCTCGGACGACCCTGGAAGGAGTACTCCAGAACCATCATAATGGAATCATTCATCGACGACTTGATCCAGCCAGAAGGGTGGCTCCCATGGGCAGGGGACTGGGGCCTCAAGACTTGCTTCTACACAGAGTTCAACTGTTATGGCCCAGGCTCCGACAAGTCCAAGAGGGTCAAGTGGAGGGGGATCAAGACCATTACGCCAAAGCATGCCCTCGATTTCACTGTAGGCAGGTTCATTTTGGGGGATAGGTGGATTAAGCCCACTGGAGTTCCATATGTCTCCGGCATGACCAAAGCCGGCGGCGCCGCCACCAAGGGTGCAGCTGCTCATTGA 1749 52.72 MSYRDDDAQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETTDPATGNKSHEISSSVKLIKDICQPTDYKQECVESLKSAGTSDPKELVQAGFKAAVKLIQAAANKSITLKEIEKDPRASKALAGCKELMDFAIEELKWSIKRLGEFDITKLDEMLIDIKIWLSATITYQETCLDGFENTTGNAAEKMKKALKTSMRVSSNGLAMVTQISSMLTDLQIPGINRRRLLDIPVLGHDDYPDWANPGMRRLLAAKGKPNIVVAKDGSGQYKTIQEALNRVPKRKNNQTFVIHIKQGVYKEYLTINKTLTHLMLIGDGPKKTIISGNKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPEKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCVVSGTIDFVFGDAAAVFQGCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNSSFKPDTDLVPVKKQFRSYLGRPWKEYSRTIIMESFIDDLIQPEGWLPWAGDWGLKTCFYTEFNCYGPGSDKSKRVKWRGIKTITPKHALDFTVGRFILGDRWIKPTGVPYVSGMTKAGGAATKGAAAH 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46148720 46150927 - Maker00027984 Lcy2g2224 626989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2224 582 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Lcy2g2224 582 FunFam Pectinesterase 251 568 - -
Lcy2g2224 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Lcy2g2224 582 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Lcy2g2224 582 CDD PMEI-like_3 64 212 - -
Lcy2g2224 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Lcy2g2224 582 FunFam Pectinesterase 57 211 - -
Lcy2g2224 582 Pfam Plant invertase/pectin methylesterase inhibitor 59 206 IPR006501 GO:0004857(InterPro)
Lcy2g2224 582 PANTHER PECTINESTERASE 13 559 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy2g2224 582 Gene3D - 251 568 IPR012334 -
Lcy2g2224 582 Pfam Pectinesterase 257 554 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy2g2224 582 SUPERFAMILY Pectin lyase-like 255 567 IPR011050 -
Lcy2g2224 582 SMART PMEI_2 56 206 IPR006501 GO:0004857(InterPro)
Lcy2g2224 582 NCBIfam pectinesterase inhibitor domain 56 210 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0753 Lcy-Chr12:9638380 Lcy2g2224 Lcy-Chr2:46148720 3.93E-222 dispersed
Lcy12g0754 Lcy-Chr12:9647648 Lcy2g2224 Lcy-Chr2:46148720 3.53E-219 dispersed
Lcy2g2224 Lcy-Chr2:46148720 Lcy7g2042 Lcy-Chr7:48067961 8.12E-158 dispersed
Lcy12g1385 Lcy-Chr12:31097205 Lcy2g2224 Lcy-Chr2:46148720 1.58E-125 wgd
Lcy2g2224 Lcy-Chr2:46148720 Lcy6g1632 Lcy-Chr6:29758567 3.36E-55 wgd
Lcy2g2224 Lcy-Chr2:46148720 Lcy6g1408 Lcy-Chr6:20932881 2.71E-45 wgd
Lcy2g2224 Lcy-Chr2:46148720 Lcy8g0358 Lcy-Chr8:10990330 2.47E-91 wgd
Lcy2g2224 Lcy-Chr2:46148720 Lcy8g0180 Lcy-Chr8:4250777 7.42E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2224 K01051 - csv:101207393 1009.98