Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2311 ATGAAAAACGAGGGGCAAGAATCGGAGCCGAGCTACTTCCATGGATTCCGATCGGTTTCAGCCGCTTGTTTCTCTCTTCTCCGACTTGGGTCGCCGGAAGTTCGCCGGAATTTCGGATTTCTGGTCAATGCTTCAGATTCCGGTGCTCTAGCTCTCATTTTCCCGGAAAATCAAGTTGCAAATGTTGTTCCACACTCAGATAGCTATTGGGATTTTCTTACACCTGATGATCTGTCACAAGAGGCCATCAGGATTTGTTTGAGAAGAACGACGAGTACACGAAACCGACTATACATCGAAAAGGCAATGGAGCATTTGTTATTCAAGTTTAATGAACTAACAAAGTCACTTAGAGCTAAGAAATGGAGAAACTCTGAAAATGCTTCTGTTGTGAGTGGAAGAGAAGCTGCAGAAGCAATGGCTAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTGCGGGAGTGTAAATATCGACGGTTCGAGCAACTTTGTCTCGAGTTTCTCGAAGAGAGGCGAGAAAGGAGTCAATCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGTCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGGCATGGACCATGGGGCCATTTTGTTGCAAAAAAGGTTAGAAAGTCAATGCCAACTGCTCTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTGCTCTTCACCCACATTTGGAACTCAACTCAGGTAAAACACATCTACAGTTCAATCTATGGGAGCATTCTTATATAGAAGCCTGTGCTACTGTCGATCAAGAACTCGAGCGACACCGTAAAATCGACACGTTTCATAGTGGAACAACGGCCCTTTCCATCGTCCGACAAGGTGATGTAATTGTTATTGCAAACATCGGCGACTCCCGGGCCGTGCTAGCTACAACTCCTGATGATGGAAACTTGGTACCGTCACCAATTCAGCTCACTATCGATTTCAAGCCGAATCTACCTCAGGAGGCTGAGAGGATAGCACAATGCAATGGGAGAGTTTTCGGCTTGGAAGATGAACCGGGGACTCACCGTCTTTGGCTTCCGAACGGTGAAACGCCGGGGCTATCGATGTCGAGATCGTTCGGCGATTTTTGTGTTAAGTGTTTTGGACTCATTTCTCTGCCGGATGTAACACAAAGAACTGTAACCAACAAAGACTTATTTGTTGTTCTTGCAACTGATGGGATATGGGACGTCGTCTCGAATCAAGAAGCAGTGCAGATCGTACATTCGACCGTAGATAGAGCAAAATCAGCTCGGCGGCTGGTTGATTATGCAACATGTGCATGGAAGCGGAAGAGGCCGCGAATTGCAGTCGATGACATGTCGGTTATCGTCCTCTTCCTCCATTCTTCACCTTTGCATCAACAAGCTTTTGTTGTAGCTCCATTGTAG 1425 45.96 MKNEGQESEPSYFHGFRSVSAACFSLLRLGSPEVRRNFGFLVNASDSGALALIFPENQVANVVPHSDSYWDFLTPDDLSQEAIRICLRRTTSTRNRLYIEKAMEHLLFKFNELTKSLRAKKWRNSENASVVSGREAAEAMAKSAKKKDLIIHGCGSVNIDGSSNFVSSFSKRGEKGVNQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKKVRKSMPTALLCNWQEALVQTALHPHLELNSGKTHLQFNLWEHSYIEACATVDQELERHRKIDTFHSGTTALSIVRQGDVIVIANIGDSRAVLATTPDDGNLVPSPIQLTIDFKPNLPQEAERIAQCNGRVFGLEDEPGTHRLWLPNGETPGLSMSRSFGDFCVKCFGLISLPDVTQRTVTNKDLFVVLATDGIWDVVSNQEAVQIVHSTVDRAKSARRLVDYATCAWKRKRPRIAVDDMSVIVLFLHSSPLHQQAFVVAPL 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48436680 48441038 + Maker00006423 Lcy2g2311 627076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2311 474 Gene3D - 158 461 IPR036457 -
Lcy2g2311 474 PANTHER PROTEIN PHOSPHATASE 140 458 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy2g2311 474 Pfam Protein phosphatase 2C 189 436 IPR001932 -
Lcy2g2311 474 CDD PP2Cc 164 459 IPR001932 -
Lcy2g2311 474 FunFam Probable protein phosphatase 2C 34 156 461 - -
Lcy2g2311 474 ProSiteProfiles PPM-type phosphatase domain profile. 165 459 IPR001932 -
Lcy2g2311 474 SMART PP2C_4 156 457 IPR001932 -
Lcy2g2311 474 SUPERFAMILY PP2C-like 164 460 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0768 Lcy-Chr12:9887431 Lcy2g2311 Lcy-Chr2:48436680 3.96E-127 dispersed
Lcy2g2311 Lcy-Chr2:48436680 Lcy4g1251 Lcy-Chr4:28606587 1.18E-101 dispersed
Lcy12g0857 Lcy-Chr12:11843620 Lcy2g2311 Lcy-Chr2:48436680 2.61E-08 wgd
Lcy2g2311 Lcy-Chr2:48436680 Lcy4g1812 Lcy-Chr4:44155899 3.71E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2311 - - - 0.0