Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2316 ATGACTTCTTTTGTCAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAATTGATAAATGTTGGCCAGAAGCAAGATGCCTTACAAGCTCTTCACGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAAAGGATTATGTTTAAGTATGTTGAGCTTTGCGTGGACATGAGGAAAGGGAGGTTTGCAAAGGATGGTTTAATTCAGTATCGTATTGTTTGTCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCTACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCATTGGAAGAAGCTCTGGATGTTGATGACTTAGAAGCTGATAAACGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGGGAGAAGGGAAAGGATAGATCCGATCGTGAACTTGTTACCCCTTGGTTTAAATTTTTATGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCGAAGTTGGAGGCACTTTACGCGATGACTGCCCATCGTGCCTTCCAGTTCTGTAAGCTGTATAAAAGAACGACAGAATTTCGCAGATTATGTGAAATTATTAGAAATCATCTTGCTAACCTTAACAAGTATAGAGACCAAAGAGATCGACCTGACCTATCTGCACCAGAGAGTTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAGGGTTGCCACAGAGCTTGAACTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCCAAACCATCGTTGATGGTGGTTTATTATGTCAAATTAACAGAGATCTTCTGGATATCCGATAGTAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTCCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGACTTACAGCTGATAGCATCATCAGTTGTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCCAAGCATGGTGCTTCACATTTAGAACTTGAACATGAGAAAGAACGCAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGCAAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGGGCTGTGCAACTCAGGAAATTAAAGATCTTTATCATCTTTTGGAGCATGAGTTCTATCCTCTTGATCTTGCATTAAAATTGCAACCCTTATTGACCAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCCTCATCTGTCCCCGAAGTGCAATTGTCCCAGTACGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCCAGGTGTACCAGACTATGAAAATTGAAAGTCTATCTCAGATGATACCATTTTTTGATTTTTCTGCTGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCAAGGAACATCGTGATATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGAGACCACCTGACTGTTCTTGCTGAATCCCTAAACAAAGTGAGAGCCATGATCTACCCTCCAGTAAGGAAAGCTTCAAAAACTGGTGAAATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGCTTCTTGCTCGGAAATCAATAATCGAGAAGAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAGTTACTGAAGATAACTGAAGAGGCTGAACAGAAGCGGCTTGCCGCAGAATATGAACAAAGGAAAAGTCAACGGCTTCGTAGAGAAATGGAGGAGCGAGAACTTGAAGAAGCACAAGCTTTGCTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTTGATTCTGAAAAGTTGACGAAACAATCTTTAATGCAATTGGCACTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAGAAGCTAGCAAAAACCATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCAGCAACGTTAATTGAAGCTGCATTTCAGCAACGATTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGCTTGAGGTTGAGTTGAGCAAGCAGCGCCATGAAGGTGATCTCAAGGAGAAGAATAGATTGGCTCGAATGTTGGAGAGTAAGGTTGGCAAGAAAATTTTCCAAGAAAGAGTCATCAGTCTTCGCCAAGAGGAGTTCAACAAACGTAGAGCTGAGAGAGAAGAGCAGATAAGGCAAATAATTCAGGCTCGGAAAGTGGAAAGGGAGGCGAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATCAGAATATTGCGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCTGAGAGGAGAAAAAGGGAGGAAGCTGAACGGAAGGCAAAATTGGATGAGATTGCTGAGAAGCAGAGGCAGAGGGAGCGAGAATTGGAAGAGAAAGAAAGACTGCGGAAAGAAATGCTCTTTGGTGGTGGCAGATCAGCCGATGCTCCAGCTAGACCTGATGTTTCTCCTGGTTCTCGGCCTCAGGAGTCTGGTACTGCTGCTCCCGCTGCTGCAGCTGCTGCGGCTGCTGGCCCGTCCCCAGGAAAATATGTGCCTAGGTTCCGGCGGGAACGGACTGAAAGCTCCAGCCCTAATGCACCACCATCTGAACCTGATCGATGGGGAAGCAGCAGGCCCGATAATCGAACATCGCAACCAGACAGCTGGCGCAATGAAGATCGTAGACCACCTTCGTTTGGAAGTTCGAGATCATCATGGTCCTCATCGCGAGTTCCTGCTCGTGGTTCAGAACGCTGA 2928 43.51 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLRVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLGCATQEIKDLYHLLEHEFYPLDLALKLQPLLTKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVIFGNLGIESDGLRDHLTVLAESLNKVRAMIYPPVRKASKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKSQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQSLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKVGKKIFQERVISLRQEEFNKRRAEREEQIRQIIQARKVEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERLRKEMLFGGGRSADAPARPDVSPGSRPQESGTAAPAAAAAAAAGPSPGKYVPRFRRERTESSSPNAPPSEPDRWGSSRPDNRTSQPDSWRNEDRRPPSFGSSRSSWSSSRVPARGSER 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48547185 48556605 + Maker00006390 Lcy2g2316 627081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2316 975 Gene3D UVR domain 217 268 - -
Lcy2g2316 975 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Lcy2g2316 975 Coils Coil 93 120 - -
Lcy2g2316 975 Gene3D - 363 494 - -
Lcy2g2316 975 Gene3D - 269 343 - -
Lcy2g2316 975 Pfam eIF3a, PCI domain, TPR-like region 8 408 IPR054711 -
Lcy2g2316 975 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 960 IPR027512 GO:0005852(InterPro)
Lcy2g2316 975 Pfam PCI domain 438 509 IPR000717 -
Lcy2g2316 975 Coils Coil 802 861 - -
Lcy2g2316 975 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Lcy2g2316 975 MobiDBLite consensus disorder prediction 955 975 - -
Lcy2g2316 975 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Lcy2g2316 975 Coils Coil 610 649 - -
Lcy2g2316 975 Coils Coil 732 752 - -
Lcy2g2316 975 MobiDBLite consensus disorder prediction 816 864 - -
Lcy2g2316 975 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Lcy2g2316 975 MobiDBLite consensus disorder prediction 816 975 - -
Lcy2g2316 975 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Lcy2g2316 975 Coils Coil 561 600 - -
Lcy2g2316 975 Coils Coil 669 699 - -
Lcy2g2316 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 967 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2316 K03254 - csv:101209344 1509.2