Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2337 ATGGTTTGTGAAGAAGAAGCTCTAATCCAAAAGGTGTCCGATTTGTATGAGCAAATCTCTTGCCTTGAAAGCCTCAAACCTTGTAAGCATGTTGACACTCTCTTCACTGAGCTGGTGGGCACGTGCATGGCACCCACGAGCCCTCATTTCCACATCAATTCACTCTCAAACCCTCTTCAGCAAATGAGATCAAATCTCATTCGCCTTTGTGGCCAAGCTGAGTCCCTTTTGGAGTCCCATTTCTCTGATCTCTTAGCCAAATTTGATTCCCCTCTTCACCATCTCCATGTCTTCCCTTACTTCTCTAACTACCTCAAACTTAGCCTCCTTGAATACTCCATCCTCCGCCGCCACTGCCCCACCGTCCCCTCCACCGTCGCCTTCGTCGGCTCCGGCCCTCTTCCTTTTACCTCCATCGTCCTCGCCACCCGCCACCTCACCGCCACTACCTTCCACAATTACGATCTCGACCCGCTTGCCAATTCCCAGGCGTCGAATTTGGTATCGTCGGACCCGGACTTGAAGACGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACCGAGGAGCTGAAACAGTACGAGGTAGTGTTTTTGGCAGCTCTTGTGGGAATGGAGAAAGAGGAGAAATTGAGAGTGATTGAGCATTTGTCTGAGTTCATGTCGGAAGGGGCTTATTTGATGGTGAGAAGTGCTCATGGAGGAAGGGCTTTTCTTTATCCTGTGGTTGAGGATTGTGATTTGGTAGGGTTTGAGGTTCTATCTGTGTTTCATCCCACCGACGAAGTCATAAACTCCGTAATACTCGCACGAAAAAAGACGAGATTCGAGGCCGAGAACGAGAACGAGGATGACGGTTGTTGTTTGTCTGTTAATTCAGACAAAAAAGAGGAAGATGATAATGAGAAGGTAATGATTAGTAGCGGTATTGAAAATGGTGTTGTGCATAATAATAATAAATGTTCTGAGATTCAAAGCTTCAATAATCATGGAGGTATGATAGAGGAATTGGCCATGGAAGCTGAGTAA 1032 47.0 MVCEEEALIQKVSDLYEQISCLESLKPCKHVDTLFTELVGTCMAPTSPHFHINSLSNPLQQMRSNLIRLCGQAESLLESHFSDLLAKFDSPLHHLHVFPYFSNYLKLSLLEYSILRRHCPTVPSTVAFVGSGPLPFTSIVLATRHLTATTFHNYDLDPLANSQASNLVSSDPDLKTRMVFHTCDIMKVTEELKQYEVVFLAALVGMEKEEKLRVIEHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVILARKKTRFEAENENEDDGCCLSVNSDKKEEDDNEKVMISSGIENGVVHNNNKCSEIQSFNNHGGMIEELAMEAE 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49174825 49176577 - Maker00006395 Lcy2g2337 627102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2337 343 Gene3D Vaccinia Virus protein VP39 6 275 IPR029063 -
Lcy2g2337 343 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 278 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy2g2337 343 Pfam Nicotianamine synthase protein 5 275 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy2g2337 343 PANTHER NICOTIANAMINE SYNTHASE 3 5 289 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0276 Lcy-Chr2:2214332 Lcy2g2337 Lcy-Chr2:49174825 1.33E-97 dispersed
Lcy2g2337 Lcy-Chr2:49174825 Lcy4g1788 Lcy-Chr4:43946117 4.67E-110 dispersed
Lcy13g1200 Lcy-Chr13:28520461 Lcy2g2337 Lcy-Chr2:49174825 9.98E-99 wgd
Lcy2g2337 Lcy-Chr2:49174825 Lcy4g1787 Lcy-Chr4:43931314 4.67E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2337 K05953 - csv:101218907 544.658