Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2346 ATGGATGCGATTGTTTCTAACCTAGAAGAGCCGAGGAATTCCGATTCGACTGCGCAGCGACCGAGTAAACGCCGAAAAATCGAATCCGAGAATCAAGCGGCGGAGACTCGCGGCGCCGAATCGACGGATTTCGGAAGACGGTGGAGAACAGAGTCGGAGCAACAGATTTACTCTTCGAAACTAGTCGAGGCTCTCCATCGAGTAAACCAGAAATCGGTATCGCCGCCGGCGAGATCTTCGATCGACGGCCGGAAAGTCCGCGAGACGGCGGACCGAGTCCTCGCCGTCGCTGCGAAAGGCAAGACGCGGTGGAGCAGAGCGATGTTGACAAATCGACTCGATCTCAAACTCAAGAAGCTGAAGAAGGCGAAACCGGCAGGAAACTGTAGCCGGCCGAAGAAATTGAAAATTAGGTCCGAGACGAAGAAATTGCCGGCAGTGCAGAGGAAAGTTCGAACTCTCGGGCGCCTGGTTCCCGGCTGCCGGAAAATCTCATTCCCGAACCTGCTTGAAGAAGCTACAGATTACATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACTGCCGTCGCCGAGCTTCTCGCCGGCGCTCCGGCTGATCGTCAAAGCTTCAGAACGAATTCGTAG 627 55.66 MDAIVSNLEEPRNSDSTAQRPSKRRKIESENQAAETRGAESTDFGRRWRTESEQQIYSSKLVEALHRVNQKSVSPPARSSIDGRKVRETADRVLAVAAKGKTRWSRAMLTNRLDLKLKKLKKAKPAGNCSRPKKLKIRSETKKLPAVQRKVRTLGRLVPGCRKISFPNLLEEATDYIAALQMQVRAMTAVAELLAGAPADRQSFRTNS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49380921 49381547 + Maker00006426 Lcy2g2346 627111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2346 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 196 IPR036638 GO:0046983(InterPro)
Lcy2g2346 208 MobiDBLite consensus disorder prediction 1 49 - -
Lcy2g2346 208 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 48 194 IPR044660 GO:0006355(InterPro)
Lcy2g2346 208 CDD bHLH_AtIBH1_like 138 189 IPR044549 GO:0006355(InterPro)
Lcy2g2346 208 MobiDBLite consensus disorder prediction 16 33 - -
Lcy2g2346 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1331 Lcy-Chr11:36952604 Lcy2g2346 Lcy-Chr2:49380921 1.32E-35 transposed
Lcy12g0860 Lcy-Chr12:11865896 Lcy2g2346 Lcy-Chr2:49380921 1.38E-48 transposed
Lcy2g2346 Lcy-Chr2:49380921 Lcy4g1776 Lcy-Chr4:43818474 1.09E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2346 - - - 0.0