Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2366 ATGGCTGCTGGTGGTGATTTCTTGCCACCCTTGGTTATGTTGGTTGTCCAATTCCTCTATGCAGGCTTGAACATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCACTTGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTATTGGTTCGAAAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTGTGTTCCTTAACTGGGGCAACAGCTAACCAAGTTTTTTACTATGTTGGGTTAAAATATTCAACCCCCACCATCGCATGTGCATTGACCAATGTCCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTCTGGCGATCAAGACAAGTGCAGGTGCAGCCAAGGTGATCGGAACTGTTGTGTGTGTCGGAGGAGCAATGTTTCTGTCGTTCTACCGTGGACAAACCATCGAGCTGGGTGAATCTGGGGTTCATTGGAAGTATGCTGAGATTATGAGGGGGGAAAGTCCCTCCAGCCAAGGCAGCAGCATATGGGGCTCTCTCTGCTTAATCATAAGCTCTGTTGCTTGGGCGGCTTGGTTTGTAATCCAAGCGAGAGTGAACGAGAAGTTTCCAGCTCCCTACACGAGCACGGCTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATCGCCATAGGCATTGAACACAAGTCTGCTGCAGCTTGGTCATTGAAAAACTCAATCAGGCTCGTCGGCGCTCTCTATTCGGGAGTGGCGTGCTCTGGGCTTGCATTTTGCCTAACCTCCTGGGGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAGCCCCTTCTTGCTCGTTATCGTGGCCATTTTCAGCTGGGCCTTCTTTCAAGAAAAATTATACGTAGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAAGAGGTGAAACTACAACAAGATATCGAAATGGTGGCCGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAAAGATGACTTGGAAGAACAGTCCTATGTGGTTTCAAATGCCAATATTCTCCATAAGTAA 1116 46.59 MAAGGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESLAIKTSAGAAKVIGTVVCVGGAMFLSFYRGQTIELGESGVHWKYAEIMRGESPSSQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAIGIEHKSAAAWSLKNSIRLVGALYSGVACSGLAFCLTSWGIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQDIEMVAAAEAKLDDCNNKDDLEEQSYVVSNANILHK 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49771275 49774228 - Maker00006512 Lcy2g2366 627131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2366 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 143 - -
Lcy2g2366 371 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Lcy2g2366 371 Pfam EamA-like transporter family 11 143 IPR000620 GO:0016020(InterPro)
Lcy2g2366 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 328 - -
Lcy2g2366 371 PANTHER WAT1-RELATED PROTEIN 11 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy2g2366 371 Coils Coil 333 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0794 Lcy-Chr10:24067703 Lcy2g2366 Lcy-Chr2:49771275 1.60E-70 dispersed
Lcy10g0796 Lcy-Chr10:24218987 Lcy2g2366 Lcy-Chr2:49771275 5.88E-71 dispersed
Lcy2g2366 Lcy-Chr2:49771275 Lcy7g0734 Lcy-Chr7:7054917 4.93E-80 dispersed
Lcy12g1488 Lcy-Chr12:34100437 Lcy2g2366 Lcy-Chr2:49771275 3.77E-44 transposed
Lcy5g1678 Lcy-Chr5:39038859 Lcy2g2366 Lcy-Chr2:49771275 5.39E-57 transposed
Lcy6g0031 Lcy-Chr6:334775 Lcy2g2366 Lcy-Chr2:49771275 4.70E-63 transposed
Lcy10g0790 Lcy-Chr10:23944251 Lcy2g2366 Lcy-Chr2:49771275 1.18E-65 wgd
Lcy2g2366 Lcy-Chr2:49771275 Lcy4g1766 Lcy-Chr4:43696502 9.06E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2366 - - - 0.0