Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2387 ATGACTCGGAAGAAGGTGAAGCTGGCTTACATAGCCAATGACTCAGCGAGGAAGGCCACCTTCAAGAAGAGGAAGAGAGGGCTGATGAAGAAGGTCAGCGAACTCAGCACTCTCTGTGGGATTGAGGCTTGCGCCATCGTCTTCAGCCCTTACGACTCTCAGCCTGAGCTTTGGCCTTCCGCCCTCGGAGTCCAACGCGTCCTCTCTCACTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAATCAAGAGACATTTCTGCGGCAGAGGATCGCAAAGGCGAACGAGCAGGTGAAGAAGATGAGGAAAGACAACCGAGAGAAGGAGATCACGCGGCTGATGTTCCAGAGCCTGACCGGCGCCAAAGGGCTGCACGGCCTCAACATGGTGGACTTGAACGACCTCGGTTGGCTCATCGACCAGAATCTCAAGGACATCACCAAACGCATCGACTCGCTTCGAAAGCCGTCACTGCAGCAGTCGGAGACCGTGGTCGAGAGGAACCCACTGCCACCGCCGCCGCCACCTCAGCCTCAGCCGCCACAGACCGCGGGCTGGCTGATGGAGCTGGTGAGCCCTCAGGATCAGATGGGGTTCGTTGGGGATGACATGCTTTTGCCGTTTGGAGATCACAGTTACAACCATAATGCCATGTGGTCCAATGCCTTTTTCCCTTAG 687 56.19 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSALGVQRVLSHFKKMPEMEQSKKMVNQETFLRQRIAKANEQVKKMRKDNREKEITRLMFQSLTGAKGLHGLNMVDLNDLGWLIDQNLKDITKRIDSLRKPSLQQSETVVERNPLPPPPPPQPQPPQTAGWLMELVSPQDQMGFVGDDMLLPFGDHSYNHNAMWSNAFFP 228
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 50403958 50404717 - Maker00037634 Lcy2g2387 627152
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2387 228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy2g2387 228 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy2g2387 228 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy2g2387 228 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Lcy2g2387 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy2g2387 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy2g2387 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy2g2387 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy2g2387 228 Coils Coil 87 114 - -
Lcy2g2387 228 MobiDBLite consensus disorder prediction 170 185 - -
Lcy2g2387 228 MobiDBLite consensus disorder prediction 160 187 - -
Lcy2g2387 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy2g2387 228 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lcy2g2387 228 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2387 Lcy-Chr2:50403958 Lcy5g1421 Lcy-Chr5:34129940 4.51E-83 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19789 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2387 - - - 0.0