Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2423 ATGGTGGCGGCGGCGGCAGTTTCGAGTAGCAAATGTTGGGCAACCCAAAACTCTCAAAAGCTCAGTGTCACTGCCGCCTCTCTCTCGTTGGTGCCTCCGCCGCCGTCGTCTTTCTTCCATTCGTGCCACCGCAGCATCCCTCCTAGCGGTTTTGCACTTATTTTCCAGTCTCTCGTTGTTAGTGAGCACGTCATCCTGGGGAGAACACGCAATATGGCTCAAAAACAGATCGAGGAACGAATGGAAACGACTGAGAAAGATGTCACAGTGCTGAAAGAGTCAGTTCAGCGGATTGAGAAGAGTATGGAGAGAATGATGATAATGATGGCAGACGTAATGGCAAACAAAGGGAAAATGGTTTCAGAAGTTACCGAAGGTTCGTCTCAAATGGAGAAACAAGGGGATGCCTCCGGCGAAGGTGGAGAGAGGAAAGGTGAAGAAATGGCTGGTCAATCAGATCCTCACCTGACCCTATTTTCTGCAGAAGAGGTCGAGTTTGTCGCCGAAGACGAAATGGTGGAGATTGTTCCTAATATGAGAATGGAACCTCTGAATTTGATTTGTGGGAATTATGGTCCGTTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTCTGAAAAAAAGAGGGAAATGTGCAATTAGGCCTCCAGAGTGGATGTCAGTGGGTTCTTTGGACCTACGTGAAGGATTGACAGTCAAAGGAAACTCTGTTTCCCAGAATATTGCTACTGGTTTCATCGAGAACTTGATCAGTTCGCAATCTCATTGTTTTTTGCATTGTGGATTAGAAAAGTTGACACAAATTTTGGAGGCGGAACGAGAGTCTCAAGGATCTTTCCAGATTCTACCCTTCCATTACGTGGAAATAGCAAAACTTCTGTTTGACCATGCACGAGATGACGTTTCTGACATGTATTTGGTGAGGTCTCTTATTGAAGATGTCAGGGATGTTAGGTTTCACAAAGTTGAAACCAGCTTGGAGTCAATTGATACACGCACATCTGCAGTAAAGATTAAAGATCTATCTGCCATGGAAGTGAATATAGTTCGACCATTTGTCGGTAGAGCGTTGCAGGCAATTTACAAGCATGGAAATCCGGAGTTGGTTCCAGATCAAGAAAGGGCGGCCAGTGTGCAGCCACAAGGACACGATCACGGACAAAGACGACCTCTTCGGAGACGGTAG 1200 46.25 MVAAAAVSSSKCWATQNSQKLSVTAASLSLVPPPPSSFFHSCHRSIPPSGFALIFQSLVVSEHVILGRTRNMAQKQIEERMETTEKDVTVLKESVQRIEKSMERMMIMMADVMANKGKMVSEVTEGSSQMEKQGDASGEGGERKGEEMAGQSDPHLTLFSAEEVEFVAEDEMVEIVPNMRMEPLNLICGNYGPFYPQIATEVPLWLAIALKKRGKCAIRPPEWMSVGSLDLREGLTVKGNSVSQNIATGFIENLISSQSHCFLHCGLEKLTQILEAERESQGSFQILPFHYVEIAKLLFDHARDDVSDMYLVRSLIEDVRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVGRALQAIYKHGNPELVPDQERAASVQPQGHDHGQRRPLRRR 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51070653 51080378 + Maker00037664 Lcy2g2423 627188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2423 399 MobiDBLite consensus disorder prediction 136 150 - -
Lcy2g2423 399 MobiDBLite consensus disorder prediction 122 154 - -
Lcy2g2423 399 Pfam GINS complex protein helical bundle domain 268 358 IPR021151 -
Lcy2g2423 399 SUPERFAMILY PriA/YqbF domain 159 218 - -
Lcy2g2423 399 Gene3D - 267 379 - -
Lcy2g2423 399 Coils Coil 74 101 - -
Lcy2g2423 399 MobiDBLite consensus disorder prediction 377 399 - -
Lcy2g2423 399 FunFam DNA replication complex GINS protein PSF2 266 382 - -
Lcy2g2423 399 SUPERFAMILY GINS helical bundle-like 267 370 IPR036224 -
Lcy2g2423 399 CDD GINS_A_psf2 213 370 - -
Lcy2g2423 399 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 267 384 IPR007257 GO:0000727(PANTHER)|GO:0000811(PANTHER)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lcy2g2423 399 FunFam DNA replication complex GINS protein PSF2 159 224 - -
Lcy2g2423 399 CDD GINS_B_Psf2 160 221 - -
Lcy2g2423 399 Gene3D - 159 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2423 Lcy-Chr2:51070653 Lcy6g0392 Lcy-Chr6:3711380 1.37E-84 dispersed
Lcy2g2423 Lcy-Chr2:51070653 Lcy2g2306 Lcy-Chr2:48280008 1.12E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2423 K10733 - csv:101212053 365.155