Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0013 ATGTACTCAGCGAGTGGCGAGAGCAGTGGCTTGGCTAGGCTATGGGATGCAGCTGCAAATCATAATTTGTTGAGAAAAGATGGAAGTCTCAATTTGGAGTGCCTATTTTTTGGAGGGGAAGGAAAAGACAGAACGTATAGGGCTCGGTTTTGGTTTTCGAACATGGAAATGGATCAGGTTGATTTGAGTGTTCGATTATCTGCGCTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAAGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGCACTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACTATTGCTTGTTCCTTGCCACCTGCTTATCCAAATGATTTTGCATATAAAGTAGTTGGTGTCTTGGACACTAGAGAGGCAGATATTAAACGGCATTTCGATGATTGTTTCAATTTTATCGACGAAGGAAGACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCCCAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGAAAAAGTGCGGTATGAATCTAACTCAAGCATTGGAACACGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTCGGTTTCATGGTTCAACTCAAGGACTTCGAAACGGCTCTTCAAGCTATGTTTTGTCCAACTGAAACTGTGTCTATGCTTACTTGA 720 42.08 MYSASGESSGLARLWDAAANHNLLRKDGSLNLECLFFGGEGKDRTYRARFWFSNMEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEEGLFLGTIGAAHNKDELKKLNITHILTIACSLPPAYPNDFAYKVVGVLDTREADIKRHFDDCFNFIDEGRQSGGGVLVHCFAGISPSVTITVAYLMKKKKCGMNLTQALEHVKSRRPQASPNVGFMVQLKDFETALQAMFCPTETVSMLT 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 415355 417747 - Maker00035649 Lcy3g0013 627205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0013 239 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 146 206 IPR000387 GO:0016311(InterPro)
Lcy3g0013 239 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 83 224 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
Lcy3g0013 239 Pfam Dual specificity phosphatase, catalytic domain 92 223 IPR000340 GO:0016311(InterPro)
Lcy3g0013 239 SMART dsp_5 84 224 IPR020422 GO:0006470(InterPro)
Lcy3g0013 239 FunFam Dual specificity phosphatase 12 86 236 - -
Lcy3g0013 239 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 85 226 IPR029021 -
Lcy3g0013 239 Gene3D Protein tyrosine phosphatase superfamily 78 229 IPR029021 -
Lcy3g0013 239 CDD DSP 85 220 - -
Lcy3g0013 239 ProSiteProfiles Dual specificity protein phosphatase domain profile. 84 227 IPR020422 GO:0006470(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0013 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0243 Lcy-Chr13:2598344 Lcy3g0013 Lcy-Chr3:415355 1.93E-131 dispersed
Lcy3g0013 Lcy-Chr3:415355 Lcy3g0025 Lcy-Chr3:785051 8.05E-166 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy9g0745 . 3 101 Protein tyrosine phosphatase (PTP) family AT1G71860 74.7 2.1e-41 167.2
Lcy2g0017 . 132 859 Protein tyrosine phosphatase (PTP) family AT5G23720 63.0 5.3e-244 841.6
Lcy2g0016 . 370 542 Protein tyrosine phosphatase (PTP) family AT5G23720 72.6 4.4e-65 247.3
Lcy13g0243 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 8.6e-44 174.1
Lcy3g0013 . 87 226 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.4e-41 166.0
Lcy3g0025 . 378 513 Protein tyrosine phosphatase (PTP) family AT3G06110 58.8 1.5e-40 163.3
Lcy4g0737 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 4.7e-72 268.1
Lcy7g1054 . 34 273 Protein tyrosine phosphatase (PTP) family AT3G10940 68.1 1.9e-99 359.8
Lcy10g0212 . 124 628 Protein tyrosine phosphatase (PTP) family AT3G01510 64.8 3.8e-195 678.3
Lcy4g0731 . 33 242 Protein tyrosine phosphatase (PTP) family AT2G32960 63.1 4.7e-73 271.9
Lcy4g2209 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.2e-79 294.3
Lcy4g2209 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.0e-45 180.6
Lcy4g0731 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.7e-70 263.1
Lcy2g1461 . 8 228 Protein tyrosine phosphatase (PTP) family AT3G02800 60.2 3.3e-74 275.4
Lcy4g0731 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 6.8e-51 198.0
Lcy7g0844 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.3e-62 238.8
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy4g0225 . 104 685 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 1.8e-216 749.6
Lcy1g0966 . 31 634 Protein tyrosine phosphatase (PTP) family AT3G19420 60.1 2.9e-198 689.1
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy8g1980 . 64 269 Protein tyrosine phosphatase (PTP) family AT3G44620 59.0 3.9e-67 252.3
Lcy6g2209 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 2.3e-111 399.4
Lcy1g1532 . 1 402 Protein tyrosine phosphatase (PTP) family AT3G09100 57.4 1.9e-121 434.1
Lcy1g1532 . 5 402 Protein tyrosine phosphatase (PTP) family AT5G01290 53.9 3.8e-111 399.8
Lcy1g1532 . 86 294 Protein tyrosine phosphatase (PTP) family AT5G28210 64.9 4.3e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004089 1 2 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 7 3 1 39