Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g0013 | ATGTACTCAGCGAGTGGCGAGAGCAGTGGCTTGGCTAGGCTATGGGATGCAGCTGCAAATCATAATTTGTTGAGAAAAGATGGAAGTCTCAATTTGGAGTGCCTATTTTTTGGAGGGGAAGGAAAAGACAGAACGTATAGGGCTCGGTTTTGGTTTTCGAACATGGAAATGGATCAGGTTGATTTGAGTGTTCGATTATCTGCGCTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAAGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGCACTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACTATTGCTTGTTCCTTGCCACCTGCTTATCCAAATGATTTTGCATATAAAGTAGTTGGTGTCTTGGACACTAGAGAGGCAGATATTAAACGGCATTTCGATGATTGTTTCAATTTTATCGACGAAGGAAGACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCCCAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGAAAAAGTGCGGTATGAATCTAACTCAAGCATTGGAACACGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTCGGTTTCATGGTTCAACTCAAGGACTTCGAAACGGCTCTTCAAGCTATGTTTTGTCCAACTGAAACTGTGTCTATGCTTACTTGA | 720 | 42.08 | MYSASGESSGLARLWDAAANHNLLRKDGSLNLECLFFGGEGKDRTYRARFWFSNMEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEEGLFLGTIGAAHNKDELKKLNITHILTIACSLPPAYPNDFAYKVVGVLDTREADIKRHFDDCFNFIDEGRQSGGGVLVHCFAGISPSVTITVAYLMKKKKCGMNLTQALEHVKSRRPQASPNVGFMVQLKDFETALQAMFCPTETVSMLT | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 415355 | 417747 | - | Maker00035649 | Lcy3g0013 | 627205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g0013 | 239 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 146 | 206 | IPR000387 | GO:0016311(InterPro) | |
| Lcy3g0013 | 239 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE | 83 | 224 | - | GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER) | |
| Lcy3g0013 | 239 | Pfam | Dual specificity phosphatase, catalytic domain | 92 | 223 | IPR000340 | GO:0016311(InterPro) | |
| Lcy3g0013 | 239 | SMART | dsp_5 | 84 | 224 | IPR020422 | GO:0006470(InterPro) | |
| Lcy3g0013 | 239 | FunFam | Dual specificity phosphatase 12 | 86 | 236 | - | - | |
| Lcy3g0013 | 239 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 85 | 226 | IPR029021 | - | |
| Lcy3g0013 | 239 | Gene3D | Protein tyrosine phosphatase superfamily | 78 | 229 | IPR029021 | - | |
| Lcy3g0013 | 239 | CDD | DSP | 85 | 220 | - | - | |
| Lcy3g0013 | 239 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 84 | 227 | IPR020422 | GO:0006470(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g0243 | Lcy-Chr13:2598344 | Lcy3g0013 | Lcy-Chr3:415355 | 1.93E-131 | dispersed | |
| Lcy3g0013 | Lcy-Chr3:415355 | Lcy3g0025 | Lcy-Chr3:785051 | 8.05E-166 | dispersed |
Pathway information