Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0025 ATGGAGCCGGCGGTAGGCTTATTCAGAAATAAGACGGCATCATGGAGGATGCCGAGTCAGATGTCATGCTCTCGACCATGGCGAACAACCAAACGAGGGGTCCTAGTCTTGGAGGTCTCACATGATGGCGACAGATGGGCGAGCCGAGACGCCAAAGACATCCATAAGAAGTGGGTGAAGGAGACTCACCCACCGGGAGATCACAGCAGGTGCGTGCGGAAGCGAGGAGCGCTTCGTCCTGACAAACGCACCAACTTGGACCACGAGGAGGACCGGAACTCGCAAGAGGCAAGTTCCCCACATGGACGACATCAGATGCAGCAGCAACCACTTGAGGGCGCCACGCATGGAGGTGTGACCCAACCATATCCAGGAGCCATGGAGCAAGTTCCCCAAGTACCCGAAGATATCTGGCCGGAGGGCCAAATGGGCATTATTCAGCCCATTGTGAGGTTAGCAAGGGCGCTGACGGGCACCTACTACCCAGCCAAGCACGATAGGCGCGCATCTGGGCCACTAGCAGGCGGCTGGCACTGCCCAGCGCAGGCATGCGATAGCAGGCAGACACACATGCGCACTCACGGGTTGTGGATGCGAGGTCTGTCTCGCTTGGGTTGTGGTAGATCGGAGTACCTTGAAGTTTGTGGTTGGACTGTGCTGATTATAGAAGTGTTTTATCCGCTTTTCAGGACTGATCCTAGTTTGACTGTTAGATCCCAGCTTCAGGCACGTTATCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGGTCAGGCACGTTATTCGTGCGCCAAATGGCACCAAACATGTTTTCATGCATCAGTTGCTCCACCGTATTTTATGCGAGTGGCGAGAGCAGTGGCTTGGCTAGGCTATGGGATGCAGCTGCAAATCATAATTTGTTGAGAAAAGATGGAAGTCTCAATTTGGAGTGCCTTTTTTTTGAAGGGGAAGGAAAAGACAGAACGTATAGGGCTCGGTTTTGGTTTTCGAACATGGAAATGGATCAGGTTGATTTGAGTGTTCGATTATCTGCGCTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAAGACAGAATTCCTTGCCAAATTGAAGAGCTGCTGTTCTTTGTGGTTTGTCATGGTCTGTTCTTAGGCTCTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACTATTGCTTGTTCCTTGCCACCTGCTTATCCAAATGATTTTGCATATAAAGTAGTTGGTGTCTTGGACACTAGAGAGGCAGATATTAAACGGCATTTCGATGATTGTTTCAATTTTATCGACGAAGGAAGACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCCCAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGAAAAAGTGCGGTATGAATCTAACTCAAGCATTGGAACACGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTCGGTTTCATGGTTCAACTCAAGGACTTCGAAACGGCTCTTCAAGCTATGTTTTGTCCAACTGAAACTGTGTCTATGCTTTCTTGA 1581 49.02 MEPAVGLFRNKTASWRMPSQMSCSRPWRTTKRGVLVLEVSHDGDRWASRDAKDIHKKWVKETHPPGDHSRCVRKRGALRPDKRTNLDHEEDRNSQEASSPHGRHQMQQQPLEGATHGGVTQPYPGAMEQVPQVPEDIWPEGQMGIIQPIVRLARALTGTYYPAKHDRRASGPLAGGWHCPAQACDSRQTHMRTHGLWMRGLSRLGCGRSEYLEVCGWTVLIIEVFYPLFRTDPSLTVRSQLQARYRALSQFRTVLSLWSGTLFVRQMAPNMFSCISCSTVFYASGESSGLARLWDAAANHNLLRKDGSLNLECLFFEGEGKDRTYRARFWFSNMEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEELLFFVVCHGLFLGSIGAAHNKDELKKLNITHILTIACSLPPAYPNDFAYKVVGVLDTREADIKRHFDDCFNFIDEGRQSGGGVLVHCFAGISPSVTITVAYLMKKKKCGMNLTQALEHVKSRRPQASPNVGFMVQLKDFETALQAMFCPTETVSMLS 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 785051 789232 - Maker00035632 Lcy3g0025 627217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0025 526 MobiDBLite consensus disorder prediction 99 115 - -
Lcy3g0025 526 Gene3D Protein tyrosine phosphatase superfamily 369 516 IPR029021 -
Lcy3g0025 526 Pfam Dual specificity phosphatase, catalytic domain 379 510 IPR000340 GO:0016311(InterPro)
Lcy3g0025 526 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 433 493 IPR000387 GO:0016311(InterPro)
Lcy3g0025 526 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 364 511 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
Lcy3g0025 526 MobiDBLite consensus disorder prediction 57 127 - -
Lcy3g0025 526 MobiDBLite consensus disorder prediction 57 98 - -
Lcy3g0025 526 FunFam Dual specificity phosphatase 12 373 523 - -
Lcy3g0025 526 CDD DSP 375 507 - -
Lcy3g0025 526 ProSiteProfiles Dual specificity protein phosphatase domain profile. 371 514 IPR020422 GO:0006470(InterPro)
Lcy3g0025 526 SMART dsp_5 370 511 IPR020422 GO:0006470(InterPro)
Lcy3g0025 526 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 372 513 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0025 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0013 Lcy-Chr3:415355 Lcy3g0025 Lcy-Chr3:785051 8.05E-166 dispersed
Lcy3g0025 Lcy-Chr3:785051 Lcy3g0815 Lcy-Chr3:29356455 1.40E-12 dispersed
Lcy3g0025 Lcy-Chr3:785051 Lcy12g1269 Lcy-Chr12:26918704 4.25E-13 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy9g0745 . 3 101 Protein tyrosine phosphatase (PTP) family AT1G71860 74.7 2.1e-41 167.2
Lcy2g0017 . 132 859 Protein tyrosine phosphatase (PTP) family AT5G23720 63.0 5.3e-244 841.6
Lcy2g0016 . 370 542 Protein tyrosine phosphatase (PTP) family AT5G23720 72.6 4.4e-65 247.3
Lcy13g0243 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 8.6e-44 174.1
Lcy3g0013 . 87 226 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.4e-41 166.0
Lcy3g0025 . 378 513 Protein tyrosine phosphatase (PTP) family AT3G06110 58.8 1.5e-40 163.3
Lcy4g0737 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 4.7e-72 268.1
Lcy7g1054 . 34 273 Protein tyrosine phosphatase (PTP) family AT3G10940 68.1 1.9e-99 359.8
Lcy10g0212 . 124 628 Protein tyrosine phosphatase (PTP) family AT3G01510 64.8 3.8e-195 678.3
Lcy4g0731 . 33 242 Protein tyrosine phosphatase (PTP) family AT2G32960 63.1 4.7e-73 271.9
Lcy4g2209 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.2e-79 294.3
Lcy4g2209 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.0e-45 180.6
Lcy4g0731 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.7e-70 263.1
Lcy2g1461 . 8 228 Protein tyrosine phosphatase (PTP) family AT3G02800 60.2 3.3e-74 275.4
Lcy4g0731 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 6.8e-51 198.0
Lcy7g0844 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.3e-62 238.8
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy4g0225 . 104 685 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 1.8e-216 749.6
Lcy1g0966 . 31 634 Protein tyrosine phosphatase (PTP) family AT3G19420 60.1 2.9e-198 689.1
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy8g1980 . 64 269 Protein tyrosine phosphatase (PTP) family AT3G44620 59.0 3.9e-67 252.3
Lcy6g2209 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 2.3e-111 399.4
Lcy1g1532 . 1 402 Protein tyrosine phosphatase (PTP) family AT3G09100 57.4 1.9e-121 434.1
Lcy1g1532 . 5 402 Protein tyrosine phosphatase (PTP) family AT5G01290 53.9 3.8e-111 399.8
Lcy1g1532 . 86 294 Protein tyrosine phosphatase (PTP) family AT5G28210 64.9 4.3e-72 270.0