Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0025 ATGGAGCCGGCGGTAGGCTTATTCAGAAATAAGACGGCATCATGGAGGATGCCGAGTCAGATGTCATGCTCTCGACCATGGCGAACAACCAAACGAGGGGTCCTAGTCTTGGAGGTCTCACATGATGGCGACAGATGGGCGAGCCGAGACGCCAAAGACATCCATAAGAAGTGGGTGAAGGAGACTCACCCACCGGGAGATCACAGCAGGTGCGTGCGGAAGCGAGGAGCGCTTCGTCCTGACAAACGCACCAACTTGGACCACGAGGAGGACCGGAACTCGCAAGAGGCAAGTTCCCCACATGGACGACATCAGATGCAGCAGCAACCACTTGAGGGCGCCACGCATGGAGGTGTGACCCAACCATATCCAGGAGCCATGGAGCAAGTTCCCCAAGTACCCGAAGATATCTGGCCGGAGGGCCAAATGGGCATTATTCAGCCCATTGTGAGGTTAGCAAGGGCGCTGACGGGCACCTACTACCCAGCCAAGCACGATAGGCGCGCATCTGGGCCACTAGCAGGCGGCTGGCACTGCCCAGCGCAGGCATGCGATAGCAGGCAGACACACATGCGCACTCACGGGTTGTGGATGCGAGGTCTGTCTCGCTTGGGTTGTGGTAGATCGGAGTACCTTGAAGTTTGTGGTTGGACTGTGCTGATTATAGAAGTGTTTTATCCGCTTTTCAGGACTGATCCTAGTTTGACTGTTAGATCCCAGCTTCAGGCACGTTATCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGGTCAGGCACGTTATTCGTGCGCCAAATGGCACCAAACATGTTTTCATGCATCAGTTGCTCCACCGTATTTTATGCGAGTGGCGAGAGCAGTGGCTTGGCTAGGCTATGGGATGCAGCTGCAAATCATAATTTGTTGAGAAAAGATGGAAGTCTCAATTTGGAGTGCCTTTTTTTTGAAGGGGAAGGAAAAGACAGAACGTATAGGGCTCGGTTTTGGTTTTCGAACATGGAAATGGATCAGGTTGATTTGAGTGTTCGATTATCTGCGCTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAAGACAGAATTCCTTGCCAAATTGAAGAGCTGCTGTTCTTTGTGGTTTGTCATGGTCTGTTCTTAGGCTCTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACTATTGCTTGTTCCTTGCCACCTGCTTATCCAAATGATTTTGCATATAAAGTAGTTGGTGTCTTGGACACTAGAGAGGCAGATATTAAACGGCATTTCGATGATTGTTTCAATTTTATCGACGAAGGAAGACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCCCAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGAAAAAGTGCGGTATGAATCTAACTCAAGCATTGGAACACGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTCGGTTTCATGGTTCAACTCAAGGACTTCGAAACGGCTCTTCAAGCTATGTTTTGTCCAACTGAAACTGTGTCTATGCTTTCTTGA 1581 49.02 MEPAVGLFRNKTASWRMPSQMSCSRPWRTTKRGVLVLEVSHDGDRWASRDAKDIHKKWVKETHPPGDHSRCVRKRGALRPDKRTNLDHEEDRNSQEASSPHGRHQMQQQPLEGATHGGVTQPYPGAMEQVPQVPEDIWPEGQMGIIQPIVRLARALTGTYYPAKHDRRASGPLAGGWHCPAQACDSRQTHMRTHGLWMRGLSRLGCGRSEYLEVCGWTVLIIEVFYPLFRTDPSLTVRSQLQARYRALSQFRTVLSLWSGTLFVRQMAPNMFSCISCSTVFYASGESSGLARLWDAAANHNLLRKDGSLNLECLFFEGEGKDRTYRARFWFSNMEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEELLFFVVCHGLFLGSIGAAHNKDELKKLNITHILTIACSLPPAYPNDFAYKVVGVLDTREADIKRHFDDCFNFIDEGRQSGGGVLVHCFAGISPSVTITVAYLMKKKKCGMNLTQALEHVKSRRPQASPNVGFMVQLKDFETALQAMFCPTETVSMLS 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 785051 789232 - Maker00035632 Lcy3g0025 627217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0025 526 MobiDBLite consensus disorder prediction 99 115 - -
Lcy3g0025 526 Gene3D Protein tyrosine phosphatase superfamily 369 516 IPR029021 -
Lcy3g0025 526 Pfam Dual specificity phosphatase, catalytic domain 379 510 IPR000340 GO:0016311(InterPro)
Lcy3g0025 526 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 433 493 IPR000387 GO:0016311(InterPro)
Lcy3g0025 526 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 364 511 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
Lcy3g0025 526 MobiDBLite consensus disorder prediction 57 127 - -
Lcy3g0025 526 MobiDBLite consensus disorder prediction 57 98 - -
Lcy3g0025 526 FunFam Dual specificity phosphatase 12 373 523 - -
Lcy3g0025 526 CDD DSP 375 507 - -
Lcy3g0025 526 ProSiteProfiles Dual specificity protein phosphatase domain profile. 371 514 IPR020422 GO:0006470(InterPro)
Lcy3g0025 526 SMART dsp_5 370 511 IPR020422 GO:0006470(InterPro)
Lcy3g0025 526 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 372 513 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0013 Lcy-Chr3:415355 Lcy3g0025 Lcy-Chr3:785051 8.05E-166 dispersed
Lcy3g0025 Lcy-Chr3:785051 Lcy3g0815 Lcy-Chr3:29356455 1.40E-12 dispersed
Lcy3g0025 Lcy-Chr3:785051 Lcy12g1269 Lcy-Chr12:26918704 4.25E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0025 - - - 0.0