Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0037 ATGAATTCAGAAGTAACGCACCCACAGCCACCATCTTACCTCCTTGCTTTCTTCTCAGCCATCCGATCTCTGGCGGTTAAATCCCCACTCCTCCTCTCGCCCGTTAGATCCCCACTCAATTTGCAGCTGATATTTTTTCAGATATTTCTTTCTGCGTTTCCTTTGCAGAGGAAGCAAAAGGATGAGATTTTCAGCTTCAGCCACCACCACCATCATCTTCTTCATCTTCTTCTTCTTCTTCTTCTTTCCCAACATTCTCCCTTTGCGACCCCGTCAGTGAAAGAGGACTCTGAAATGGGCGAGGCCGTTATGGTGAGCTCTGAGGATGTGGATTTGGATTTGGATTTGGATTATGTCAGAGCCGACATCGACATCGACATCGACGATATGGCGGAGGCAGAGAGTATGGGCACTCACAAACCCACCAGAGAAGGCAGTTCAACTGGGGTTGGCTTCGGGATTAAGTGGGAGCGCTTTTTGCCCAAGATGATGCTCAGGGTCTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATACTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGTGAGAACTGACATTCAAGAAAAGGTGGAAGTCACTTCAGAAAATGAGACTGCAAGCAACCACTCAACTGGTTATGTTGCTGGAGTTCAGAGGACTAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTCGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGACAGGGAAAAGCCTCTCCAAATGCCTTCGAGCTACAGAAAGACGAACGTCACATTAATTTGAGTCAGAGATTGGTTATGCATGAAAATGAAGCTGGAGGATTGGCAATGAGTTGCTATGTCAATGCTGATTTACCAATTACACTAAGCATGGGTCTTGAGCCAATCAATGATGGGAGAAGTCCTAATATTGCTAGTGAAGCAGGTGATAATAAGGATTTGCTTGCCTACCCCTCCAGAGATGCAACTGCCTTGAATCATGCTTGTATCAAGTATCCTGATAACTACCAAAAAAGTTCTCCTTCCACTAATGCTGCCACAAACAATTTCGGTTCTGCTCTTCATTTGGATCTTTCCCTGAGACGATGTCAACCTAATGATTTTGAGGACTGTGCTGCAGAAGGACGGGCTACCCTCAAGCATTCTAGTGCTTCAGCTTTCACAAGATACACTTTCAGGCCATTGCAAACACTTCAAGCAAAATCAAGCAGTATCTGTGATGAGCAAAAGGAATTTGGAAGCAATCCCGGGCATATTGGAAGTATAGCTGCTACTTCTGCGTCTGACACGATAAATGCAACACTAAGTCTGCAAAAGATTAATACTGATATGCCTCTGGTAACCAGTCAATCTACTCATTCCGAAGTCGCAAGATCAAGTACTTCAGAGACGGTAATCCCTCCTCAAGTTTCAGTGAAAGATTTGATGTCTAATAATCCATGCTCGGGCTACAGCTCTTTACTTTCTCCCAACTTCTGTGCACAACGGGGTACCCCTTCATCTCCATGCCCAACTTTAGTCACTCATCCAGAACCCATCTTTGCAAAACAGACTGTTTATCCCTTAAACCTTGAGAATCATAATTTGGAGCAGTTTCTGAACCAGCATCACAACGTAAGCAATCCAGCAAGCCGAAAGATAGAGAACTCAGGGCAAAAGTTGGAGTCTGCAGAAAATCAAGGCCATATATCGCCTACAACTGATCACAGTGCAAATAGTAGTCTATGTGGTGGTAATACAACTCATGTTCGAAGCATGGGATATCCTAGCACCTGCGGAAGCAACAGCAATGTCGATCGGGTTGGCCTTGCAGGGGTTACATCTGAGAGCAAAAACGAAGAAGCTTTGTTTTCCCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGATAGATGTTATGAGAAAAAGGTAGTTATTGCATGCCTAATCTGTCTACATTATTTGGTTTACGGTGCTGTTTTCTTATGGAGGCATATTTCATCTCAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAGCAGCGTCCAAGAGTGAAGGGACAGTTTGTCCGTAGAGTATACAATGATCCATTGCCTGCAGAAGCCAACGCCAATACATCCAACGGTTAA 2493 44.65 MNSEVTHPQPPSYLLAFFSAIRSLAVKSPLLLSPVRSPLNLQLIFFQIFLSAFPLQRKQKDEIFSFSHHHHHLLHLLLLLLLSQHSPFATPSVKEDSEMGEAVMVSSEDVDLDLDLDYVRADIDIDIDDMAEAESMGTHKPTREGSSTGVGFGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDIQEKVEVTSENETASNHSTGYVAGVQRTRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKASPNAFELQKDERHINLSQRLVMHENEAGGLAMSCYVNADLPITLSMGLEPINDGRSPNIASEAGDNKDLLAYPSRDATALNHACIKYPDNYQKSSPSTNAATNNFGSALHLDLSLRRCQPNDFEDCAAEGRATLKHSSASAFTRYTFRPLQTLQAKSSSICDEQKEFGSNPGHIGSIAATSASDTINATLSLQKINTDMPLVTSQSTHSEVARSSTSETVIPPQVSVKDLMSNNPCSGYSSLLSPNFCAQRGTPSSPCPTLVTHPEPIFAKQTVYPLNLENHNLEQFLNQHHNVSNPASRKIENSGQKLESAENQGHISPTTDHSANSSLCGGNTTHVRSMGYPSTCGSNSNVDRVGLAGVTSESKNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVVIACLICLHYLVYGAVFLWRHISSQVRYESRKKLAEQRPRVKGQFVRRVYNDPLPAEANANTSNG 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1028624 1033856 - Maker00035509 Lcy3g0037 627229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0037 830 Pfam CCT motif 785 813 IPR010402 GO:0005515(InterPro)
Lcy3g0037 830 SUPERFAMILY CheY-like 159 290 IPR011006 -
Lcy3g0037 830 Gene3D - 163 378 - -
Lcy3g0037 830 Pfam Response regulator receiver domain 167 278 IPR001789 GO:0000160(InterPro)
Lcy3g0037 830 MobiDBLite consensus disorder prediction 347 362 - -
Lcy3g0037 830 ProSiteProfiles CCT domain profile. 771 813 IPR010402 GO:0005515(InterPro)
Lcy3g0037 830 MobiDBLite consensus disorder prediction 657 689 - -
Lcy3g0037 830 ProSiteProfiles Response regulatory domain profile. 166 284 IPR001789 GO:0000160(InterPro)
Lcy3g0037 830 SMART REC_2 165 280 IPR001789 GO:0000160(InterPro)
Lcy3g0037 830 PANTHER TWO-COMPONENT RESPONSE REGULATOR 157 354 IPR045279 GO:0009736(InterPro)
Lcy3g0037 830 CDD psREC_PRR 167 270 - -
Lcy3g0037 830 MobiDBLite consensus disorder prediction 347 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0037 K12130 - - csv:101209788 1127.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1399 Lcy-Chr1:13561483 Lcy3g0037 Lcy-Chr3:1028624 2.63E-24 dispersed
Lcy3g0037 Lcy-Chr3:1028624 Lcy5g2527 Lcy-Chr5:48076697 1.97E-26 dispersed
Lcy3g0037 Lcy-Chr3:1028624 Lcy2g0559 Lcy-Chr2:4789191 1.00E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 1 198 Response Regulator Gene Family AT1G59940 60.5 4.7e-54 209.1
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G59940 57.9 2.9e-40 163.3
Lcy1g1833 . 11 154 Response Regulator Gene Family AT1G59940 56.3 5.5e-39 159.1
Lcy7g0695 . 9 176 Response Regulator Gene Family AT1G59940 53.0 4.0e-37 152.9
Lcy10g1232 . 2 161 Response Regulator Gene Family AT1G59940 54.0 6.8e-37 152.1
Lcy7g0216 . 16 182 Response Regulator Gene Family AT1G10470 65.3 6.3e-51 198.4
Lcy5g0961 . 61 203 Response Regulator Gene Family AT1G10470 58.7 6.5e-40 161.8
Lcy1g1833 . 17 154 Response Regulator Gene Family AT1G10470 60.9 5.5e-39 158.7
Lcy10g1232 . 18 178 Response Regulator Gene Family AT1G10470 51.2 1.5e-36 150.6
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 11 172 Response Regulator Gene Family AT5G62920 62.4 9.3e-47 184.1
Lcy1g1833 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.2e-40 162.9
Lcy5g0961 . 46 205 Response Regulator Gene Family AT5G62920 52.5 1.1e-39 160.6
Lcy7g0216 . 28 182 Response Regulator Gene Family AT1G19050 59.1 4.5e-42 168.7
Lcy1g1833 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.0e-39 158.3
Lcy5g0961 . 59 205 Response Regulator Gene Family AT1G19050 53.7 3.9e-38 155.6
Lcy1g1833 . 8 268 Response Regulator Gene Family AT2G41310 52.2 8.8e-60 227.6
Lcy5g0961 . 52 207 Response Regulator Gene Family AT2G41310 75.0 9.8e-59 224.2
Lcy10g1232 . 10 160 Response Regulator Gene Family AT2G41310 59.5 1.1e-41 167.5
Lcy7g0216 . 25 155 Response Regulator Gene Family AT2G41310 57.4 1.9e-38 156.8
Lcy9g1560 . 15 163 Response Regulator Gene Family AT2G41310 51.3 1.2e-37 154.1
Lcy1g1833 . 8 268 Response Regulator Gene Family AT3G57040 53.2 1.2e-62 237.3
Lcy5g0961 . 52 209 Response Regulator Gene Family AT3G57040 78.5 4.9e-61 231.9
Lcy7g0695 . 4 168 Response Regulator Gene Family AT3G57040 61.7 4.0e-47 185.7
Lcy10g1232 . 14 190 Response Regulator Gene Family AT3G57040 54.4 4.1e-44 175.6
Lcy7g0216 . 25 155 Response Regulator Gene Family AT3G57040 58.0 2.1e-40 163.3
Lcy9g1560 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.6e-40 162.5
Lcy7g0216 . 25 184 Response Regulator Gene Family AT1G74890 60.6 1.6e-44 176.8
Lcy1g1833 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.6e-39 160.2
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G74890 55.2 1.0e-38 157.5
Lcy2g0621 . 26 169 Response Regulator Gene Family AT1G74890 58.5 1.1e-37 154.1
Lcy5g0961 . 57 205 Response Regulator Gene Family AT2G40670 55.3 9.8e-40 160.6
Lcy7g0216 . 26 156 Response Regulator Gene Family AT2G40670 54.7 3.5e-37 152.1
Lcy1g1833 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 151.0
Lcy5g0961 . 57 205 Response Regulator Gene Family AT3G56380 54.7 2.0e-39 159.5
Lcy7g0216 . 26 156 Response Regulator Gene Family AT3G56380 54.1 6.5e-38 154.5
Lcy1g1833 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.2e-37 152.1
Lcy10g1232 . 10 157 Response Regulator Gene Family AT3G56380 54.0 9.4e-37 150.6
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy3g0037 . 154 291 Response Regulator Gene Family AT5G60100 61.6 2.9e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19792 None None None None Lcy TR