Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0037 ATGAATTCAGAAGTAACGCACCCACAGCCACCATCTTACCTCCTTGCTTTCTTCTCAGCCATCCGATCTCTGGCGGTTAAATCCCCACTCCTCCTCTCGCCCGTTAGATCCCCACTCAATTTGCAGCTGATATTTTTTCAGATATTTCTTTCTGCGTTTCCTTTGCAGAGGAAGCAAAAGGATGAGATTTTCAGCTTCAGCCACCACCACCATCATCTTCTTCATCTTCTTCTTCTTCTTCTTCTTTCCCAACATTCTCCCTTTGCGACCCCGTCAGTGAAAGAGGACTCTGAAATGGGCGAGGCCGTTATGGTGAGCTCTGAGGATGTGGATTTGGATTTGGATTTGGATTATGTCAGAGCCGACATCGACATCGACATCGACGATATGGCGGAGGCAGAGAGTATGGGCACTCACAAACCCACCAGAGAAGGCAGTTCAACTGGGGTTGGCTTCGGGATTAAGTGGGAGCGCTTTTTGCCCAAGATGATGCTCAGGGTCTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATACTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGTGAGAACTGACATTCAAGAAAAGGTGGAAGTCACTTCAGAAAATGAGACTGCAAGCAACCACTCAACTGGTTATGTTGCTGGAGTTCAGAGGACTAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTCGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGACAGGGAAAAGCCTCTCCAAATGCCTTCGAGCTACAGAAAGACGAACGTCACATTAATTTGAGTCAGAGATTGGTTATGCATGAAAATGAAGCTGGAGGATTGGCAATGAGTTGCTATGTCAATGCTGATTTACCAATTACACTAAGCATGGGTCTTGAGCCAATCAATGATGGGAGAAGTCCTAATATTGCTAGTGAAGCAGGTGATAATAAGGATTTGCTTGCCTACCCCTCCAGAGATGCAACTGCCTTGAATCATGCTTGTATCAAGTATCCTGATAACTACCAAAAAAGTTCTCCTTCCACTAATGCTGCCACAAACAATTTCGGTTCTGCTCTTCATTTGGATCTTTCCCTGAGACGATGTCAACCTAATGATTTTGAGGACTGTGCTGCAGAAGGACGGGCTACCCTCAAGCATTCTAGTGCTTCAGCTTTCACAAGATACACTTTCAGGCCATTGCAAACACTTCAAGCAAAATCAAGCAGTATCTGTGATGAGCAAAAGGAATTTGGAAGCAATCCCGGGCATATTGGAAGTATAGCTGCTACTTCTGCGTCTGACACGATAAATGCAACACTAAGTCTGCAAAAGATTAATACTGATATGCCTCTGGTAACCAGTCAATCTACTCATTCCGAAGTCGCAAGATCAAGTACTTCAGAGACGGTAATCCCTCCTCAAGTTTCAGTGAAAGATTTGATGTCTAATAATCCATGCTCGGGCTACAGCTCTTTACTTTCTCCCAACTTCTGTGCACAACGGGGTACCCCTTCATCTCCATGCCCAACTTTAGTCACTCATCCAGAACCCATCTTTGCAAAACAGACTGTTTATCCCTTAAACCTTGAGAATCATAATTTGGAGCAGTTTCTGAACCAGCATCACAACGTAAGCAATCCAGCAAGCCGAAAGATAGAGAACTCAGGGCAAAAGTTGGAGTCTGCAGAAAATCAAGGCCATATATCGCCTACAACTGATCACAGTGCAAATAGTAGTCTATGTGGTGGTAATACAACTCATGTTCGAAGCATGGGATATCCTAGCACCTGCGGAAGCAACAGCAATGTCGATCGGGTTGGCCTTGCAGGGGTTACATCTGAGAGCAAAAACGAAGAAGCTTTGTTTTCCCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGATAGATGTTATGAGAAAAAGGTAGTTATTGCATGCCTAATCTGTCTACATTATTTGGTTTACGGTGCTGTTTTCTTATGGAGGCATATTTCATCTCAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAGCAGCGTCCAAGAGTGAAGGGACAGTTTGTCCGTAGAGTATACAATGATCCATTGCCTGCAGAAGCCAACGCCAATACATCCAACGGTTAA 2493 44.65 MNSEVTHPQPPSYLLAFFSAIRSLAVKSPLLLSPVRSPLNLQLIFFQIFLSAFPLQRKQKDEIFSFSHHHHHLLHLLLLLLLSQHSPFATPSVKEDSEMGEAVMVSSEDVDLDLDLDYVRADIDIDIDDMAEAESMGTHKPTREGSSTGVGFGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDIQEKVEVTSENETASNHSTGYVAGVQRTRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKASPNAFELQKDERHINLSQRLVMHENEAGGLAMSCYVNADLPITLSMGLEPINDGRSPNIASEAGDNKDLLAYPSRDATALNHACIKYPDNYQKSSPSTNAATNNFGSALHLDLSLRRCQPNDFEDCAAEGRATLKHSSASAFTRYTFRPLQTLQAKSSSICDEQKEFGSNPGHIGSIAATSASDTINATLSLQKINTDMPLVTSQSTHSEVARSSTSETVIPPQVSVKDLMSNNPCSGYSSLLSPNFCAQRGTPSSPCPTLVTHPEPIFAKQTVYPLNLENHNLEQFLNQHHNVSNPASRKIENSGQKLESAENQGHISPTTDHSANSSLCGGNTTHVRSMGYPSTCGSNSNVDRVGLAGVTSESKNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVVIACLICLHYLVYGAVFLWRHISSQVRYESRKKLAEQRPRVKGQFVRRVYNDPLPAEANANTSNG 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1028624 1033856 - Maker00035509 Lcy3g0037 627229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0037 830 Pfam CCT motif 785 813 IPR010402 GO:0005515(InterPro)
Lcy3g0037 830 SUPERFAMILY CheY-like 159 290 IPR011006 -
Lcy3g0037 830 Gene3D - 163 378 - -
Lcy3g0037 830 Pfam Response regulator receiver domain 167 278 IPR001789 GO:0000160(InterPro)
Lcy3g0037 830 MobiDBLite consensus disorder prediction 347 362 - -
Lcy3g0037 830 ProSiteProfiles CCT domain profile. 771 813 IPR010402 GO:0005515(InterPro)
Lcy3g0037 830 MobiDBLite consensus disorder prediction 657 689 - -
Lcy3g0037 830 ProSiteProfiles Response regulatory domain profile. 166 284 IPR001789 GO:0000160(InterPro)
Lcy3g0037 830 SMART REC_2 165 280 IPR001789 GO:0000160(InterPro)
Lcy3g0037 830 PANTHER TWO-COMPONENT RESPONSE REGULATOR 157 354 IPR045279 GO:0009736(InterPro)
Lcy3g0037 830 CDD psREC_PRR 167 270 - -
Lcy3g0037 830 MobiDBLite consensus disorder prediction 347 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1399 Lcy-Chr1:13561483 Lcy3g0037 Lcy-Chr3:1028624 2.63E-24 dispersed
Lcy3g0037 Lcy-Chr3:1028624 Lcy5g2527 Lcy-Chr5:48076697 1.97E-26 dispersed
Lcy3g0037 Lcy-Chr3:1028624 Lcy2g0559 Lcy-Chr2:4789191 1.00E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19792 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0037 K12130 - csv:101209788 1127.08