Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0069 ATGGTTGTGAAGACATGGGTCAACCAGAGTGGTAAAGATATTGAATATGTTATACTCATGGTTTATGATGTAACTCCTTTCATGGACGATCATCCTGGAGGTGATGAAGTACTATTGTCTGCAACTGGGAAAGATGCCACGAACGATTTCGAAGATGTTGGGCACAGCGATTCGGCAAGAGAAATGATGGACAAGTATTTCATCGGAGAAATTGATCCTTCGACGGTTCCTTTGAAGAAGATTTTCATTCCATCACAACAAACCCAGTACAACCCAGATAAGACACCTGAGTTTGTGATTAAGATCTTGCAGTTTCTGGTTCCCATATTGATTTTGGGTTTGGCATTTGCTGTTCGACACTACACCAAGAATGAATGA 378 41.01 MVVKTWVNQSGKDIEYVILMVYDVTPFMDDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYFIGEIDPSTVPLKKIFIPSQQTQYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1833861 1836573 - Maker00035626 Lcy3g0069 627261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0069 125 Gene3D - 4 75 IPR036400 -
Lcy3g0069 125 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 20 78 IPR036400 -
Lcy3g0069 125 PRINTS Cytochrome B5 signature 46 53 IPR001199 -
Lcy3g0069 125 PRINTS Cytochrome B5 signature 31 45 IPR001199 -
Lcy3g0069 125 PRINTS Cytochrome B5 signature 21 31 IPR001199 -
Lcy3g0069 125 PRINTS Cytochrome B5 signature 59 71 IPR001199 -
Lcy3g0069 125 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 72 IPR001199 -
Lcy3g0069 125 Pfam Cytochrome b5-like Heme/Steroid binding domain 21 71 IPR001199 -
Lcy3g0069 125 PANTHER CYTOCHROME B5 20 123 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy3g0069 125 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 27 34 IPR018506 GO:0020037(InterPro)
Lcy3g0069 125 SMART Cyt_b5_2 9 72 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0069 K23490 - - csv:101207109 211.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1769 Lcy-Chr11:41500761 Lcy3g0069 Lcy-Chr3:1833861 2.30E-51 dispersed
Lcy12g2032 Lcy-Chr12:41663371 Lcy3g0069 Lcy-Chr3:1833861 6.89E-46 dispersed
Lcy13g0455 Lcy-Chr13:5422322 Lcy3g0069 Lcy-Chr3:1833861 4.47E-47 dispersed
Lcy13g1645 Lcy-Chr13:35406354 Lcy3g0069 Lcy-Chr3:1833861 7.57E-22 dispersed
Lcy3g0069 Lcy-Chr3:1833861 Lcy4g1076 Lcy-Chr4:20360090 1.47E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156