Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0133 ATGATTCAACTCTGGATGCACGTAATGCCACATTCGAGTTCCCGATCCGATGCAATGGCTGAGAGAAGAGGCGTTAATGGAGGCTTTTATATAGTTATTTTGTTGTTCAGGGCGCTAAGTGCCTTGATTTCAGTACGTAGAACCCGAATTTGGGCTGATTTATATTTTGCAGCGATCAACGATTTCCAGAATCTAACATACAAATATTATAATTTAGCACTAGTATGTGGGAATGACTCTAAGAAAACACACCTAATAATAGGCCTTTCTATTGGAGGGGCAGCTGTATTAGGCCTATGTCTAGGATGCTGTGTCTTCTATATTACGCAACGAAAGAAGAAACATGTCCTGAAGTTGAAAAGCAAAGATCTTCCTTCGCCTCCTTCAAGTGCAGGCATTCCAACTCCGACGACGTTTCTTTCTAATAGCATTCCTTCCTATCCTTATTCAAGATCCAATCTCGAGAATGGGAGCTCCTACTTTGGAGCTCAAGTCTTTACCTATGTCGAACTGGAGGAAGCAACTCATAATTTTGACCGTTCAAGGGAGCTTGGAGATGGAGGTTATGGCACTGTTTACTCAGGAACACTTAAGGATGGACGGATAGTTGCAGTAAAGCGCTTATACGAAAATAATTATAAATGCGTCGAGCAGTTCATGAATGAAGTCGAGATTTTATCCAAATTGCAACACCCGAATCTCGTGAAGCTTTATGGATGCACATCGAGACATAGTCGGGAACTCCTCCTAGTCTATGAATACATTCCCAATGGAACAGTGGCCGACCATCTGCATGGAAAACGAGCAAATTCAGGTTTGCTCAGTTGGTCTGTTCGGCTGAAGATTGCAATAGAGGCTGCTAATGCACTGGCTTACCTCCACCGCAAAGATATCATTCATCGTGATGTCAAAACCAATAACATTCTCCTAGACAACAGCTTCAAAGTGAAAGTGGCTGATTTCGGTCTGTCACGGTTATTTCCCGTTGATGCTACCCATGTTTCAACTGCTCCACAGGGGACACCAGGCTATGTTGATCCTGAATATTATCAATGCTACCATCTTTCTGACAAAAGTGACGTGTATAGCTTTGGAGTGGTTTTGGTTGAGCTTATATCATCACTGCAAGCAGTTGACATCAACAGGAACAGAAATGACATCAATTTGTCGAATATGGCTATTGACAGAATTCAAAATCATGCGTTACGTGATTTAGTGGATCCAGATCTTGGGTTTGAGAGGGATTATGCTGTACGATCTATGATAACATCAGTGGCAGAGTTGGCTTTTCGATGTCTTCAACAGGCAAGGGATGTGCGGCCTTCTATGGACGAAGTGCTGGAAGTTCTGAGAGAAATAGAGAATGAAGAACTGGCTGCTCGTAAAGCAGAAGTGTTGGATATAGGGTCAGATAACGTACGGCTTTTAAGGAATGCGTCATCTCTGCTTTCACCGGATTCCGGACCACTGACAGATAAATGGGTTAGAAACTCTATTATTACCTTCAACTTGAAGTTGATTCTTTTTCTTTTCTCTTTGCTTAATCTGAAATTACCATATATTTCTGTGATATAG 1575 41.9 MIQLWMHVMPHSSSRSDAMAERRGVNGGFYIVILLFRALSALISVRRTRIWADLYFAAINDFQNLTYKYYNLALVCGNDSKKTHLIIGLSIGGAAVLGLCLGCCVFYITQRKKKHVLKLKSKDLPSPPSSAGIPTPTTFLSNSIPSYPYSRSNLENGSSYFGAQVFTYVELEEATHNFDRSRELGDGGYGTVYSGTLKDGRIVAVKRLYENNYKCVEQFMNEVEILSKLQHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGKRANSGLLSWSVRLKIAIEAANALAYLHRKDIIHRDVKTNNILLDNSFKVKVADFGLSRLFPVDATHVSTAPQGTPGYVDPEYYQCYHLSDKSDVYSFGVVLVELISSLQAVDINRNRNDINLSNMAIDRIQNHALRDLVDPDLGFERDYAVRSMITSVAELAFRCLQQARDVRPSMDEVLEVLREIENEELAARKAEVLDIGSDNVRLLRNASSLLSPDSGPLTDKWVRNSIITFNLKLILFLFSLLNLKLPYISVI 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3385088 3389126 - Maker00035547 Lcy3g0133 627325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0133 524 ProSiteProfiles Protein kinase domain profile. 178 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0133 524 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 154 254 - -
Lcy3g0133 524 SUPERFAMILY Protein kinase-like (PK-like) 159 454 IPR011009 -
Lcy3g0133 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0133 524 SMART serkin_6 178 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0133 524 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524(InterPro)
Lcy3g0133 524 FunFam Wall-associated receptor kinase-like 20 255 463 - -
Lcy3g0133 524 Gene3D Transferase(Phosphotransferase) domain 1 255 467 - -
Lcy3g0133 524 Pfam Protein kinase domain 179 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0133 524 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 80 498 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lcy3g0133 524 Gene3D Phosphorylase Kinase; domain 1 151 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0422 Lcy-Chr2:3532563 Lcy3g0133 Lcy-Chr3:3385088 6.94E-158 dispersed
Lcy3g0133 Lcy-Chr3:3385088 Lcy7g0490 Lcy-Chr7:4359456 5.56E-137 dispersed
Lcy10g2317 Lcy-Chr10:46804636 Lcy3g0133 Lcy-Chr3:3385088 2.57E-179 transposed
Lcy13g2018 Lcy-Chr13:39145457 Lcy3g0133 Lcy-Chr3:3385088 3.47E-98 transposed
Lcy1g1044 Lcy-Chr1:9406711 Lcy3g0133 Lcy-Chr3:3385088 1.64E-89 transposed
Lcy1g2551 Lcy-Chr1:46483928 Lcy3g0133 Lcy-Chr3:3385088 1.66E-62 wgd
Lcy10g0222 Lcy-Chr10:3512089 Lcy3g0133 Lcy-Chr3:3385088 4.54E-31 wgd
Lcy2g1534 Lcy-Chr2:20265714 Lcy3g0133 Lcy-Chr3:3385088 5.39E-65 wgd
Lcy3g0133 Lcy-Chr3:3385088 Lcy4g0776 Lcy-Chr4:9268109 3.25E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65759 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0133 - - - 0.0