Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0138 ATGGTGAAACAATCAATCTCATTTACAATTTCGACGCTAAAAGCTAAAGCTTTCCTGAATGCAAACATTTTTTACACAGGTATTTCTGTAATGATCATATACATTCGTAGGAGACGTCGACTATCAAACAAAACTTTATCGACATTCAAGAAGAAAAGGATGAGTATAGAATCCATGATGAATTATGGACCAAAGCGATACCATTACTCAGAGATAAAGAAAATGACGAACTCTTTTTCAGACAAAGTAGGTGAAGGTGGATATGGCATTGTCTATCGAGGTAAACTAGCCGATGGTACCCTCGTAGCTATAAAAGTTCTAAAGGTGTCAAAAGGTGATGGTGAAGATTTCATAAATGAAGTTACAAGTATTAGCATAACATCACATGTTAATATAGTTAGTCTTTTAGGATTTTCTTACAATTCAAAGAAAATAACTCTAGTGTATGAGTTTATGGCTAATGGATCACTTGATAAGTTCATGTCTAGAAGTCACAATTTGGAGATGAAAATGCTTCATAGAATCATCATAGGTGTGGCAAGAGGGTTAGAGTATTTACACTGTGGGTGTAGTACAAGGATAGTGCATTTCGATATAAAACCACAAAACATTCTCTTGGATGAAGATTTCAACCCTAAAATATCCGACTTTGGCCTTGCAAAGCTTTGTAAAAGAAAAGAGAGTGCAATTTCAATGTTGGGAACTAGAGGAACAGCCGGATTCATAGCGCCAGAAGTTTTTAGTCGTGTGTTTGGAGTTGTCTCGTACAAATCTGATGTGTATAGCTATGGGATGTTGGTTCTTGATCTCGTATTAGGAGGAATAAGAAATCCTAACTCGAGTTTGTTATCTGATGAAAGTGAACTGTACTTTCCAAATTGGGTTTTCAAGAAATTTGAAACAGATAAGACAACAAGAATGGATCAAAGTTTGTTGGAAGAAGACGAAGAAATGGAGCGAAAAATGGTTATGATAGGTTTGTGGTGCATTCAAACGTCTCCATTAGATAGGCCTTCAATGAGTAGAGTATTGGAGATGTTGGAGGGAAGCATTCACTCCTTGCAAATGCCTCATTGGTTCCCTATAATAGATCAATCCAACAATCTACCTCTGAATCAATATCACATGAGATTATTTAAGGGATATTTTGGTTATTCATTTGAATTTGGTTTTTGGTGA 1179 35.79 MVKQSISFTISTLKAKAFLNANIFYTGISVMIIYIRRRRRLSNKTLSTFKKKRMSIESMMNYGPKRYHYSEIKKMTNSFSDKVGEGGYGIVYRGKLADGTLVAIKVLKVSKGDGEDFINEVTSISITSHVNIVSLLGFSYNSKKITLVYEFMANGSLDKFMSRSHNLEMKMLHRIIIGVARGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKESAISMLGTRGTAGFIAPEVFSRVFGVVSYKSDVYSYGMLVLDLVLGGIRNPNSSLLSDESELYFPNWVFKKFETDKTTRMDQSLLEEDEEMERKMVMIGLWCIQTSPLDRPSMSRVLEMLEGSIHSLQMPHWFPIIDQSNNLPLNQYHMRLFKGYFGYSFEFGFW 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3500292 3501470 - Maker00035557 Lcy3g0138 627330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0138 392 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524(InterPro)
Lcy3g0138 392 ProSiteProfiles Protein kinase domain profile. 77 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0138 392 Gene3D Phosphorylase Kinase; domain 1 49 151 - -
Lcy3g0138 392 FunFam PR5-like receptor kinase 152 358 - -
Lcy3g0138 392 SUPERFAMILY Protein kinase-like (PK-like) 54 348 IPR011009 -
Lcy3g0138 392 Pfam Protein kinase domain 80 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0138 392 PANTHER RUST RESISTANCE KINASE LR10-RELATED 37 363 IPR045874 GO:0004672(InterPro)
Lcy3g0138 392 SMART serkin_6 77 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0138 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0138 392 Gene3D Transferase(Phosphotransferase) domain 1 152 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0138 Lcy-Chr3:3500292 Lcy3g0146 Lcy-Chr3:3700277 1.06E-192 dispersed
Lcy3g0138 Lcy-Chr3:3500292 Lcy3g0143 Lcy-Chr3:3575038 8.99E-202 proximal
Lcy10g0192 Lcy-Chr10:2743993 Lcy3g0138 Lcy-Chr3:3500292 3.24E-52 wgd
Lcy3g0138 Lcy-Chr3:3500292 Lcy5g1147 Lcy-Chr5:24670694 3.54E-53 wgd
Lcy3g0138 Lcy-Chr3:3500292 Lcy9g0626 Lcy-Chr9:20737737 5.64E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65760 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0138 - - - 0.0