Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0143 ATGGACATAGAATCCATAATCAATTATGGACCAAAGCGATATCATTACTCAGAGATAAAGAAAATCACCAACTCTTTTTCAAACAAAGTAGGTGAAGGTGGATATGGCACAGTCTATCGAGGTAAACTAGTTGATGGTACAGTTGTAGCTATAAAAGTTCTAAAGGTGTCGAAAGGCAATGGCGAGGATTTCAAAAATGAAGTTATGAGTATTAGTAGAACTTCACATGTCAATATAGTTAGTCTTTTAGGATTTTCTTATAACACAAAGAAAATAGCTCTCGTGTATGAATTTATGGTCAATGGATCACTCGATAGATTCATGCCTAGAAGTTGTGATCTTGAGATGAAAATGCTTCATAAAATTGTCCTAGGTGTGGCAAGAGGGTTGGAGTATTTACACTGTGGTTGTAGTACAAGGATAGTACATTTCGATATAAAACCACAAAACATTCTCTTGGATGAAGATTTCAACCCTAAAATATCCGACTTTGGCCTTGCGAAGCTTTGCAAAAGAAAAGAGAGTGCAATTTCAATGTTGGGAACTAGAGGAACAGCTGGGTTCATAGCACCAGAAGTTTTTAGTCGTGCGTTTGGAGTTGTCTCGTACAAATCTGATGTGTATAGCTACGAGATGTTGGTTCTTGATCTCGTATTAGGAGGAATAAGAAATCCTAACTCGAGTTTGTTATCTGATGAAAGTGAAATGTACTTTCCAAATTGGATTTTCAAGAAATTTGAAACGATTAAGACGACAAGAATGGATCAAAGTTTATTGGAAGAAGACGAAGAAATGGAGCGGAAAATGGTTATGATAGGTTTGTGGTGCATTCAAACATCTCCATTGGATAGGCCTTCAATGAGTAGAGTATTGGAGATGTTAGAGGGAAGCATTCACTCCTTGCAAATGCCTCCAAGACCTTCATTGATTCCCTCTAATATGTCAACCCAACAATCTACCTCTGAATCAATATCATATGAGATTATTTAA 990 36.67 MDIESIINYGPKRYHYSEIKKITNSFSNKVGEGGYGTVYRGKLVDGTVVAIKVLKVSKGNGEDFKNEVMSISRTSHVNIVSLLGFSYNTKKIALVYEFMVNGSLDRFMPRSCDLEMKMLHKIVLGVARGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKESAISMLGTRGTAGFIAPEVFSRAFGVVSYKSDVYSYEMLVLDLVLGGIRNPNSSLLSDESEMYFPNWIFKKFETIKTTRMDQSLLEEDEEMERKMVMIGLWCIQTSPLDRPSMSRVLEMLEGSIHSLQMPPRPSLIPSNMSTQQSTSESISYEII 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3575038 3576027 - Maker00035534 Lcy3g0143 627335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0143 329 PIRSF ILK 10 304 - -
Lcy3g0143 329 FunFam PR5-like receptor kinase 99 306 - -
Lcy3g0143 329 ProSiteProfiles Protein kinase domain profile. 24 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0143 329 ProSitePatterns Protein kinases ATP-binding region signature. 30 52 IPR017441 GO:0005524(InterPro)
Lcy3g0143 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0143 329 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Lcy3g0143 329 Pfam Protein kinase domain 27 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0143 329 SMART serkin_6 24 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0143 329 MobiDBLite consensus disorder prediction 309 329 - -
Lcy3g0143 329 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 317 IPR045874 GO:0004672(InterPro)
Lcy3g0143 329 SUPERFAMILY Protein kinase-like (PK-like) 7 295 IPR011009 -
Lcy3g0143 329 Gene3D Transferase(Phosphotransferase) domain 1 99 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0143 Lcy-Chr3:3575038 Lcy3g0146 Lcy-Chr3:3700277 5.53E-181 dispersed
Lcy5g2409 Lcy-Chr5:46860121 Lcy3g0143 Lcy-Chr3:3575038 1.35E-37 dispersed
Lcy3g0138 Lcy-Chr3:3500292 Lcy3g0143 Lcy-Chr3:3575038 8.99E-202 proximal
Lcy3g0143 Lcy-Chr3:3575038 Lcy3g0145 Lcy-Chr3:3627101 3.28E-176 proximal
Lcy3g0143 Lcy-Chr3:3575038 Lcy9g0416 Lcy-Chr9:11658724 4.60E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65761 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0143 - - - 0.0