Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g0145 | ATGACCAACTCATTTTCGGACAAAATAGGTGAAGGGGGATACGGCATTGTCTATCGAAGTAAACTAGGTAATGGAACCCTCGTAGCTATAAAAGTTTTGAAGGTGTCTAAAAGTGATGGTGAAGATTTCATAAATGAAGTTACGAGTATCAGCAAAACTTCGCATGTTAATATAGTTAGTCTTTTGGGATTTTCTTACAACTCAAAGGAAATAGCACTCGTGTATGAATTTATGTCCAATGGCTCACTTGATAGCTTCATGTCTAGAAGTCACAACCTTGAGATGAAAACTCTTCATAGAATCGTTGTAGGTGTGGCAAAAGGATTAGAGTATTTACATAGTGGTTGTAGTACAAGAATAGTGCATTTTGACATAAAACCTCAAAACATTCTATTGGATGAAGATTTCAACCCTAAAATTTCTGATTTTGGCCTTGCAAAGCTCTGCAAAAGAAAGGAGAGTATAATTTCAATGTTGGGAACAAGAGGCACAGTTGGATTCATAGCACCAGAAGTTTTTAGTCGTGCATTTGGAACTGTCTCGTATAAATCAGATGTGTATAGCTATGGGATGTTGGTTCTTGATCTTGTATTGGGAGGAACAAGAAACCCTAATTCAAAATTATTATCTGATGACAGTGAAATGTACTTTCCAAATTGGGTCTTTAAAGAATTTGAATTGGGTAATTCAACAAGAATCAGTCAGAATTTGACAGGGGCAGAAGAAGACATGGCGAAGAAAATGATTATGGTAGGTTTGTGGTGCATTCAAACGTCTCCAGTTGATAGACCTTCAATGAGTAAAGTATTGGAGATGTTAGAGGGAAGCATTCACTCCTTGCAAATGCCTCCAAAACCTTCCTTGGTTCCCCAAAGATGTGTAACTCAAAAGTATACCCATGAGTCATTATCATCATATGAGGTTGTTTAA | 930 | 36.88 | MTNSFSDKIGEGGYGIVYRSKLGNGTLVAIKVLKVSKSDGEDFINEVTSISKTSHVNIVSLLGFSYNSKEIALVYEFMSNGSLDSFMSRSHNLEMKTLHRIVVGVAKGLEYLHSGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKESIISMLGTRGTVGFIAPEVFSRAFGTVSYKSDVYSYGMLVLDLVLGGTRNPNSKLLSDDSEMYFPNWVFKEFELGNSTRISQNLTGAEEDMAKKMIMVGLWCIQTSPVDRPSMSKVLEMLEGSIHSLQMPPKPSLVPQRCVTQKYTHESLSSYEVV | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3627101 | 3628030 | - | Maker00035522 | Lcy3g0145 | 627337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g0145 | 309 | SMART | serkin_6 | 3 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g0145 | 309 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 31 | IPR017441 | GO:0005524(InterPro) | |
| Lcy3g0145 | 309 | SUPERFAMILY | Protein kinase-like (PK-like) | 5 | 274 | IPR011009 | - | |
| Lcy3g0145 | 309 | Pfam | Protein kinase domain | 6 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g0145 | 309 | FunFam | PR5-like receptor kinase | 78 | 285 | - | - | |
| Lcy3g0145 | 309 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 1 | 292 | IPR045874 | GO:0004672(InterPro) | |
| Lcy3g0145 | 309 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 77 | - | - | |
| Lcy3g0145 | 309 | ProSiteProfiles | Protein kinase domain profile. | 3 | 281 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy3g0145 | 309 | PIRSF | ILK | 2 | 283 | - | - | |
| Lcy3g0145 | 309 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 120 | 132 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy3g0145 | 309 | Gene3D | Transferase(Phosphotransferase) domain 1 | 78 | 283 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g0145 | Lcy-Chr3:3627101 | Lcy5g2410 | Lcy-Chr5:46895696 | 8.68E-105 | dispersed | |
| Lcy3g0143 | Lcy-Chr3:3575038 | Lcy3g0145 | Lcy-Chr3:3627101 | 3.28E-176 | proximal | |
| Lcy3g0145 | Lcy-Chr3:3627101 | Lcy3g0146 | Lcy-Chr3:3700277 | 7.96E-178 | tandem | |
| Lcy1g2551 | Lcy-Chr1:46483928 | Lcy3g0145 | Lcy-Chr3:3627101 | 3.12E-53 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65762 | None | None | None | None | Lcy | PK |
Pathway information