Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0146 ATGATCATATACATCCGAAGAAGACGTAGACTATCAAGCAAAACATTATCAACATTCAAGAAGAAAATGCTGACTATGGAATTAGTAATGAATTCCAAACCGAAGCGATATCATTATTCAGAGATCAAGAAAATGACCAACTCATTTTCAGACAAACTAGGAGAAGGGGGATACGGTGTTGTGTATCGAGGTAAACTAGATAATGGTACCCTCATAGCTATAAAAGTTCTAAAGGTGTCGAAAAGTGATGGTGAAGATTTCATAAATGAAGTGATGAGTATTAGCAAGACTTCACATGTTAATATAGTTAGCCTTTTAGGAGTTTCTTACAACTCAAAGGAAGTAGCGCTTGTGTATGAATTTATGTCTAATGGCTCACTCGAGAGCTTCATCTCTAGAACTCAAAACCTCGAGATGAAAATCGTTCATAGAATCGTTGTAGGTGTGGCAAAAGGATTAGAATATCTACATTGTGGTTGTAGTACAAGGATAGTCCATTTCGACATAAAGCCTCAAAACATTCTATTAGATGAAGATTTCAATACTAAAATTTCTGACTTTGGCCTTGCAAAGCTTTGCAAAAGAAAGGATAGTGCGATTTCAATGTTAGGTTCAAGAGGAACAGTTGGATTCATGGCACCAGAAGTTTATAGTCGTGCATTTGGAATTGTCTCATACAAATCTGATGTGTATAGCTATGGGATGCTAGTTCTTGATCTTGTATTGGGAGGAAGAAGAAACGTTAGTTCAAAATTTTTATCTGATGATAGTGAAATGTACTTTCCAAATTGGGTTCTTAAAAATTTTGAAGCAGGTAAAACTTTAAGAAGTAATCAGAATTTGACAGAGGAAGAAGAAGAAATGGAGAAGAAAATGGTTATAGTAGGCTTGTGGTGCATTCAAACATCTCCACTTGATAGGCCTTCAATGACTAAAGTATTGGAGATGTTGGGTGGAACCAGTCACTCTTTGCAAATGCCTCCAAGATCTTCATTGGTTCTCCCTGCTGAAATGTCAACTCAACAATCTGTCTCTCAATCATTATCACCAGAAGAGGTTGTTTAA 1065 36.24 MIIYIRRRRRLSSKTLSTFKKKMLTMELVMNSKPKRYHYSEIKKMTNSFSDKLGEGGYGVVYRGKLDNGTLIAIKVLKVSKSDGEDFINEVMSISKTSHVNIVSLLGVSYNSKEVALVYEFMSNGSLESFISRTQNLEMKIVHRIVVGVAKGLEYLHCGCSTRIVHFDIKPQNILLDEDFNTKISDFGLAKLCKRKDSAISMLGSRGTVGFMAPEVYSRAFGIVSYKSDVYSYGMLVLDLVLGGRRNVSSKFLSDDSEMYFPNWVLKNFEAGKTLRSNQNLTEEEEEMEKKMVIVGLWCIQTSPLDRPSMTKVLEMLGGTSHSLQMPPRSSLVLPAEMSTQQSVSQSLSPEEVV 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3700277 3701341 + Maker00035556 Lcy3g0146 627338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0146 354 Gene3D Phosphorylase Kinase; domain 1 9 121 - -
Lcy3g0146 354 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 339 IPR045874 GO:0004672(InterPro)
Lcy3g0146 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0146 354 SUPERFAMILY Protein kinase-like (PK-like) 30 317 IPR011009 -
Lcy3g0146 354 Gene3D Transferase(Phosphotransferase) domain 1 122 326 - -
Lcy3g0146 354 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Lcy3g0146 354 FunFam PR5-like receptor kinase 122 329 - -
Lcy3g0146 354 SMART serkin_6 47 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0146 354 PIRSF ILK 8 328 - -
Lcy3g0146 354 ProSiteProfiles Protein kinase domain profile. 47 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0146 354 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0138 Lcy-Chr3:3500292 Lcy3g0146 Lcy-Chr3:3700277 1.06E-192 dispersed
Lcy3g0143 Lcy-Chr3:3575038 Lcy3g0146 Lcy-Chr3:3700277 5.53E-181 dispersed
Lcy3g0146 Lcy-Chr3:3700277 Lcy5g2410 Lcy-Chr5:46895696 7.04E-109 dispersed
Lcy3g0145 Lcy-Chr3:3627101 Lcy3g0146 Lcy-Chr3:3700277 7.96E-178 tandem
Lcy3g0146 Lcy-Chr3:3700277 Lcy6g1267 Lcy-Chr6:15708705 1.53E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65763 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0146 - - - 0.0