Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0222 ATGATTTCAAATTCAAAAGAAGAGAATTCACCTCCAAAACTAGCAGCAGCAGCAGCAGCTTCATCAAGCGCATCGGCGGCGACGCCATGGCTTAGGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGCGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTCAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTCAACGCCGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCCGCAAGCCTCGGCCTTAACTACCAATCCATGCTACTACCTCACACGCAGACACACCCGCATAGGCCGGAGTTCAAAATCAACAACTGCAACAGCATCGGCATCGGCATCGGGAAGGAAGCCGAGGACGACGCCAGCGCTCCGGAACAAAAGCAACAGAAATCGAATTCTAATCCGGGTCACCCTTGTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTACCATTGGGAGGCATCATCAACAAATAATGTTCCATTCTTTACTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCAACTGGCTCTCAGTTTTTGGAGTTCAATCACTTGCACCAAAATTTCTTGATTCAACAACCTCCTAATTTGCACTCTATAAACCAACCAACTGTTAGGCCTTTCCATTTCAATATGGCTCCCAAATTCATTTCTCAACAGAAGAATAACAATGGAGATCATCCACCAAATAAGAATGATAATGGATTTGGCTCTGATGAATGA 885 48.25 MISNSKEENSPPKLAAAAAASSSASAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLNYQSMLLPHTQTHPHRPEFKINNCNSIGIGIGKEAEDDASAPEQKQQKSNSNPGHPCSFSALLNNVSAPPFGYHWEASSTNNVPFFTTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHLHQNFLIQQPPNLHSINQPTVRPFHFNMAPKFISQQKNNNGDHPPNKNDNGFGSDE 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6477240 6478124 - Maker00018809 Lcy3g0222 627414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0222 294 ProSiteProfiles TCP domain profile. 47 105 IPR017887 -
Lcy3g0222 294 MobiDBLite consensus disorder prediction 152 173 - -
Lcy3g0222 294 Pfam TCP family transcription factor 47 129 IPR017887 -
Lcy3g0222 294 MobiDBLite consensus disorder prediction 272 294 - -
Lcy3g0222 294 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 244 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0222 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0166 Lcy-Chr1:1534012 Lcy3g0222 Lcy-Chr3:6477240 1.19E-26 dispersed
Lcy2g0506 Lcy-Chr2:4343648 Lcy3g0222 Lcy-Chr3:6477240 8.94E-37 dispersed
Lcy3g0222 Lcy-Chr3:6477240 Lcy5g2480 Lcy-Chr5:47547848 1.00E-33 dispersed
Lcy10g0882 Lcy-Chr10:27280669 Lcy3g0222 Lcy-Chr3:6477240 1.67E-12 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19795 None None None None Lcy TF