Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g0222 | ATGATTTCAAATTCAAAAGAAGAGAATTCACCTCCAAAACTAGCAGCAGCAGCAGCAGCTTCATCAAGCGCATCGGCGGCGACGCCATGGCTTAGGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGCGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTCAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTCAACGCCGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCCGCAAGCCTCGGCCTTAACTACCAATCCATGCTACTACCTCACACGCAGACACACCCGCATAGGCCGGAGTTCAAAATCAACAACTGCAACAGCATCGGCATCGGCATCGGGAAGGAAGCCGAGGACGACGCCAGCGCTCCGGAACAAAAGCAACAGAAATCGAATTCTAATCCGGGTCACCCTTGTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTACCATTGGGAGGCATCATCAACAAATAATGTTCCATTCTTTACTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCAACTGGCTCTCAGTTTTTGGAGTTCAATCACTTGCACCAAAATTTCTTGATTCAACAACCTCCTAATTTGCACTCTATAAACCAACCAACTGTTAGGCCTTTCCATTTCAATATGGCTCCCAAATTCATTTCTCAACAGAAGAATAACAATGGAGATCATCCACCAAATAAGAATGATAATGGATTTGGCTCTGATGAATGA | 885 | 48.25 | MISNSKEENSPPKLAAAAAASSSASAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLNYQSMLLPHTQTHPHRPEFKINNCNSIGIGIGKEAEDDASAPEQKQQKSNSNPGHPCSFSALLNNVSAPPFGYHWEASSTNNVPFFTTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHLHQNFLIQQPPNLHSINQPTVRPFHFNMAPKFISQQKNNNGDHPPNKNDNGFGSDE | 294 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6477240 | 6478124 | - | Maker00018809 | Lcy3g0222 | 627414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g0222 | 294 | ProSiteProfiles | TCP domain profile. | 47 | 105 | IPR017887 | - | |
| Lcy3g0222 | 294 | MobiDBLite | consensus disorder prediction | 152 | 173 | - | - | |
| Lcy3g0222 | 294 | Pfam | TCP family transcription factor | 47 | 129 | IPR017887 | - | |
| Lcy3g0222 | 294 | MobiDBLite | consensus disorder prediction | 272 | 294 | - | - | |
| Lcy3g0222 | 294 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 14 | 244 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0166 | Lcy-Chr1:1534012 | Lcy3g0222 | Lcy-Chr3:6477240 | 1.19E-26 | dispersed | |
| Lcy2g0506 | Lcy-Chr2:4343648 | Lcy3g0222 | Lcy-Chr3:6477240 | 8.94E-37 | dispersed | |
| Lcy3g0222 | Lcy-Chr3:6477240 | Lcy5g2480 | Lcy-Chr5:47547848 | 1.00E-33 | dispersed | |
| Lcy10g0882 | Lcy-Chr10:27280669 | Lcy3g0222 | Lcy-Chr3:6477240 | 1.67E-12 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19795 | None | None | None | None | Lcy | TF |
Pathway information