Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0222 ATGATTTCAAATTCAAAAGAAGAGAATTCACCTCCAAAACTAGCAGCAGCAGCAGCAGCTTCATCAAGCGCATCGGCGGCGACGCCATGGCTTAGGCTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGCGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTCAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTCAACGCCGCCAAGGACGAAATCGACGAACTCCCTCCATTGCCAATCCCATCCGCAAGCCTCGGCCTTAACTACCAATCCATGCTACTACCTCACACGCAGACACACCCGCATAGGCCGGAGTTCAAAATCAACAACTGCAACAGCATCGGCATCGGCATCGGGAAGGAAGCCGAGGACGACGCCAGCGCTCCGGAACAAAAGCAACAGAAATCGAATTCTAATCCGGGTCACCCTTGTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTACCATTGGGAGGCATCATCAACAAATAATGTTCCATTCTTTACTACATCTCAAGCTGAGGATCTTCATAACTTCAATAATGTCAATTTGTCTTTGCCTTCCCCTTTGTCCCTCTCAACTGGCTCTCAGTTTTTGGAGTTCAATCACTTGCACCAAAATTTCTTGATTCAACAACCTCCTAATTTGCACTCTATAAACCAACCAACTGTTAGGCCTTTCCATTTCAATATGGCTCCCAAATTCATTTCTCAACAGAAGAATAACAATGGAGATCATCCACCAAATAAGAATGATAATGGATTTGGCTCTGATGAATGA 885 48.25 MISNSKEENSPPKLAAAAAASSSASAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLNYQSMLLPHTQTHPHRPEFKINNCNSIGIGIGKEAEDDASAPEQKQQKSNSNPGHPCSFSALLNNVSAPPFGYHWEASSTNNVPFFTTSQAEDLHNFNNVNLSLPSPLSLSTGSQFLEFNHLHQNFLIQQPPNLHSINQPTVRPFHFNMAPKFISQQKNNNGDHPPNKNDNGFGSDE 294
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 6477240 6478124 - Maker00018809 Lcy3g0222 627414
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0222 294 ProSiteProfiles TCP domain profile. 47 105 IPR017887 -
Lcy3g0222 294 MobiDBLite consensus disorder prediction 152 173 - -
Lcy3g0222 294 Pfam TCP family transcription factor 47 129 IPR017887 -
Lcy3g0222 294 MobiDBLite consensus disorder prediction 272 294 - -
Lcy3g0222 294 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 244 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0166 Lcy-Chr1:1534012 Lcy3g0222 Lcy-Chr3:6477240 1.19E-26 dispersed
Lcy2g0506 Lcy-Chr2:4343648 Lcy3g0222 Lcy-Chr3:6477240 8.94E-37 dispersed
Lcy3g0222 Lcy-Chr3:6477240 Lcy5g2480 Lcy-Chr5:47547848 1.00E-33 dispersed
Lcy10g0882 Lcy-Chr10:27280669 Lcy3g0222 Lcy-Chr3:6477240 1.67E-12 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19795 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0222 - - - 0.0