Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0270 ATGGCTTTTCCCATTTTCAGATTACCATCCCTCTTTGCCCTTCTCGCCATTTTTCTTGCCTTCTCTAGCTTTCTTGCTTCAACAGAAGCCTATGATCCACTTGATCCAAATGGAAACATTACTGTCAAATGGGATGTTATAAACTGGACTCCTGATGGCTATGTTGCTGTTGTTACTTTGTATAATTTCCAACAATATCGTCATATTCAAGCACCGGGATGGTCTCTGCAATGGAAATGGGCAAAGAAAGAGGTCATATGGAGCATGTTGGGTGGCCAAGCAACTGAGCAAGGTGATTGTTCTAGATATAAAGGGAACATCCCCCATTGCTGCAAGAGGGATCCAACCATTGTCGATCTATTGCCCGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGGTGGAGTTCTCAACTCCTGGGTGCAAGATCCAGTTACTGCAGTGAGCTCATTTCAGCTCAGTGTTGGTGTAGCCGGAACCTCGAATAAAACTGTCAGACTGCCAAAGAACTTTACCTTAAAAGCACCTGGGCCTGGTTATACTTGTGGACCTGCTAAAATTGTTAAACCGAGCAGATTCGTTTCCCCTGACAAACGAAGAGTTACACAGGCCTTGATGACATGGAATGTTACATGCACATATTCACAATTTCTGGCCCAAAAAACTCCAACCTGCTGTGTTTCGCTGTCATCATTTTACAATGACACCATTGTTTCTTGCCCAAAATGCTCTTGTGGCTGCCAAAGCAATTTGAACGGACCCGAAAGTTGTGTGGAGGCAAATTCTCCATATTTAGCCTCTGTTACTGATTCTAGTTCTAGCAAGAACAATTTGGCTCCTCTGGTTCAGCGTACGGGCCATATGTGCCCGATCCGAGTTCACTGGCATGTGAAGATTAACTATAAGGAGTATTGGCGTTTCTACAATGATTTGCTCATGCAAGCAGGCCCTCTTGGGAATGTGCAGACAGAGTTACTTTTCAGGAAGGACCAATCGACTTTCACGTTTGATAAAGGCTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGACAATTGTGTCATGCCACCTCCAGATGCCTATCCCTACTTACCAAACGCTGGTTCTAAGCAAGGTGTTTCGTTGTGTACTATGCTATTGCTGATTTCCATGACTCTCTTGTCCTTTCGCCATTCATTTGCGTAA 1191 44.33 MAFPIFRLPSLFALLAIFLAFSSFLASTEAYDPLDPNGNITVKWDVINWTPDGYVAVVTLYNFQQYRHIQAPGWSLQWKWAKKEVIWSMLGGQATEQGDCSRYKGNIPHCCKRDPTIVDLLPGTPYNQQIANCCKGGVLNSWVQDPVTAVSSFQLSVGVAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSRFVSPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQSNLNGPESCVEANSPYLASVTDSSSSKNNLAPLVQRTGHMCPIRVHWHVKINYKEYWRFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSFRHSFA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8923368 8926014 + Maker00018680 Lcy3g0270 627462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0270 396 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0270 396 PIRSF COBRA 308 395 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0270 396 PIRSF COBRA 4 309 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0270 396 PANTHER PROTEIN COBRA 19 308 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0270 Lcy-Chr3:8923368 Lcy3g0307 Lcy-Chr3:9754620 4.67E-287 dispersed
Lcy3g0270 Lcy-Chr3:8923368 Lcy3g0271 Lcy-Chr3:8925377 8.09E-189 tandem
Lcy3g0270 Lcy-Chr3:8923368 Lcy6g1379 Lcy-Chr6:20045346 1.52E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0270 - - - 0.0