Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0271 ATGAGGTTGTTCGTTTCAGCTGTCTTCCTTTTTGTCATGTTTTCTCATGGAGTTGCCTACGATCCATTGGATCCAAATGGAAACATTACGATCAAATGGGATGTCATGTCATGGACACCCGATGGCTATGTGGCAGTTGTGACGTTGAACAACTTCCAAATGTATCGACACATAATGAGCCCTGGGTGGACGATGGGGTGGACGTGGGCGAAAAAGGAAGTGATATGGTCAATGGTGGGGTCGCAGACAACCGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAACATTCCTCATTGTTGTAAGAAAAACCCCACTGTTGTGGATTTGATGCCTGGAGTTCCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGATCAGTGTTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAACTCCCCAAGAATTTCACTCTGCTCGGTCCCGGCCCCGGATACACTTGTGGCCCTGCAAAGGTTGTGCCTTCCACCACCTTCCTCACACCCGACCGTCGTCGGAAAACTCAAGCTCTGATGACTTGGAATGTGACCTGCACTTACTCTCAGTTTCTGGCCAGAAAGAACCCTAATTGTTGTGTTTCTTTCTCGTCTTTCTACAATGATACAATCACATCTTGTCCTTCTTGTGCCTGTGGTTGCCAAAATAAGAACAGCTGTGTTAAGGGTGATTCTAAGATTCTGAAGATGGTTGGAATCAATACACCAAGGAAAGACAACGCCCCGTTCCTGCAGTGCACACATCATATGTGCCCCATTCGAGTTCACTGGCACGTGAAGCAAAATTACAAAGAATATTGGCGGGTGAAGATCGCCATCACAAACTTCAACTACCGAATGAACTATTCGCTTTGGTCTCTCGTCGTCCAACACCCGAATCTGAACAATGTAACCCAAGTTTTCAGCTTCGACTACAAACCCCTTGTTGCCTATGAATCAATCAATGACACGGGAATGTTTTACGGGATGAAGTTTTACAACGACCTTCTGATGGAAGCAGGGCCATTCGGGAATGTACAGTCAGAGGTGTTGCTGCAAAAGGACCAGAACACCTTCACCTTCAAGCAGGGATGGGCATTTCCTCGGAAAGTTTACTTCAACGGCGACGAGTGCATGCTTCCGCCACCCGACACATACCCATTCCTGCCGAACGCCGCCCGCCAAAGGCCCCCCATTGTCCTCTTAACTTTAATTGCTTTGCCGCTGCTCTTCCTGCTGCTAGCTATTTGA 1302 48.0 MRLFVSAVFLFVMFSHGVAYDPLDPNGNITIKWDVMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQISVGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCACGCQNKNSCVKGDSKILKMVGINTPRKDNAPFLQCTHHMCPIRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVAYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAARQRPPIVLLTLIALPLLFLLLAI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8925377 8928817 - Maker00018326 Lcy3g0271 627463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0271 433 PIRSF COBRA 1 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0271 433 PANTHER PROTEIN COBRA 5 424 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lcy3g0271 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0498 Lcy-Chr2:4281585 Lcy3g0271 Lcy-Chr3:8925377 7.97E-279 dispersed
Lcy3g0271 Lcy-Chr3:8925377 Lcy3g0306 Lcy-Chr3:9754620 6.75e-318 dispersed
Lcy3g0270 Lcy-Chr3:8923368 Lcy3g0271 Lcy-Chr3:8925377 8.09E-189 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0271 - - - 0.0