Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0306 ATGAGGTTGTTCGTTTCAGCTGTCTTCCTTTTTGTCATGTTTTCTCATGGAGCTGCGTACGACCCATTGGATCCAAATGGGAACGTTACGATCAAATGGGACGTCATGTCATGGACACCCGATGGCTATGTGGCAGTTGTGACGTTGAACAACTTCCAAATGTACCGACACATAATGAGTCCTGGGTGGACGATGGGGTGGACGTGGGCGAAAAAGGAAGTGATATGGTCAATGGTGGGGTCGCAGACGACCGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAACATTCCTCATTGTTGTAAGAAAAACCCCACTGTTGTAGATTTGATGCCTGGAGTTCCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGACAAGACCCTCAACCTGCTGTTTCAGCCTTTCAGATCAGTGTTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAACTCCCCAAGAATTTCACTCTGCTCGGTCCCAGTCCTGGATACACTTGTGGCCCTGCAAAGGTTGTGCCTTCCACCACCTTCCTCACACCCGACCATCGTCGTAAAACTCAAGCTCTGAGTAAGAATGTCCATTGCAACCCTCTTCCATCTCCATTTCATCTTTCAGTTTCAAGCTGTAATTTGGTCATCTTTCTTTTTTGTGCAGTGACTTGGAATGTGACCTGCACTTACTCTCAGTTTCTGGCCAGAAAGAACCCTAATTGTTGTGTTTCTTTCTCGTCTTTCTACAACGGTACAATCACATCTTGTCCTTCTTGTGCCTGTGGTTGCCAAAATAAGAACAGCTGTGTTAAGGGTGATTCTAAGATTCTGAAGATGGTTGGAATCAATACACCAAGGAAAGACAATGCCCCGTTGCTGCAGTGCACACATCATATGTGCCCCGTTCGAGTTCACTGGCATGTGAAGCAAAATTACAAAGAATATTGGCGGGTGAAGATCGCCATCACAAACTTCAACTACCGAATGAACTATTCACTTTGGTCTCTCGTCGTCCAGCACCCGAATCTGAACAATGTAACCCACGTTTTCAGCTTCGACTACAAACCCCTTGTTCCCTATGAATCAATCAATGACACAGGAATGTTTTATGGGATGAAGTTTTACAACGACCTTCTGATGGAAGCGGGGCCATTCGGGAATGTACAGTCAGAGGTGTTGCTGCAAAAGGACCAGAACACCTTCACCTTCAAGCAGGGATGGGCATTTCCTCGGAAAGTTTACTTCAACGGTGACGAGTGCATGCTTCCGCCACCCGACACATACCCATTCCTGCCAAACGCTGCCCGCCAAAGGTCCACTGTCCTCTCAGCTTCAATTGTTTTGCCACTGCTCTTCCTGCTGCTAGCTATTTGA 1386 47.19 MRLFVSAVFLFVMFSHGAAYDPLDPNGNVTIKWDVMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQPAVSAFQISVGQAGTSNKTVKLPKNFTLLGPSPGYTCGPAKVVPSTTFLTPDHRRKTQALSKNVHCNPLPSPFHLSVSSCNLVIFLFCAVTWNVTCTYSQFLARKNPNCCVSFSSFYNGTITSCPSCACGCQNKNSCVKGDSKILKMVGINTPRKDNAPLLQCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTHVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAARQRSTVLSASIVLPLLFLLLAI 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9754620 9758108 + Maker00018266 Lcy3g0306 627498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0306 461 PIRSF COBRA 1 216 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0306 461 PIRSF COBRA 221 461 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0306 461 PANTHER PROTEIN COBRA 5 454 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lcy3g0306 461 Pfam COBRA-like protein 43 203 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0271 Lcy-Chr3:8925377 Lcy3g0306 Lcy-Chr3:9754620 6.75e-318 dispersed
Lcy3g0306 Lcy-Chr3:9754620 Lcy5g2474 Lcy-Chr5:47482896 1.57E-190 dispersed
Lcy3g0306 Lcy-Chr3:9754620 Lcy3g0307 Lcy-Chr3:9754620 1.11E-223 tandem
Lcy10g2072 Lcy-Chr10:44778854 Lcy3g0306 Lcy-Chr3:9754620 3.99E-106 transposed
Lcy3g0306 Lcy-Chr3:9754620 Lcy6g1379 Lcy-Chr6:20045346 2.20E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0306 - - - 0.0