Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0307 ATGGCTTTTCCCATTTTCAGATTACCATCCCTCTTTGCCCTTCTCGCCATTTTTCTTGCCTTTTCTAGCTTTCTTGCTTCAACAGAAGCCTATGATCCACTGGATCCAAATGGAAACATTACTGTCAAATGGGATGTTATAAACTGGACTCCTGATGGCTATGTTGCTGTTGTTACTTTGTATAATTTCCAACAATATCGTCATATTCAAGCACCGGGATGGTCTCTGCAATGGAAATGGGCAAAGAAAGAGGTCATATGGAGCATGTTGGGTGGCCAAGCAACCGAGCAAGGTGATTGTTCTAGATATAAAGGGAACATCCCCCATTGCTGCAAGAGGGATCCAACCATTGTCGACTTATTGCCTGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGGTGGAGTTCTCAACTCCTGGGTGCAAGATCCAGTTACTGCAGTGAGCTCATTTCAGCTCAGTGTTGGTGCAGCCGGAACCTCGAATAAAACTGTCAGACTTCCAAAGAACTTCACCTTAAAAGCACCTGGGCCTGGTTATACTTGTGGACCTGCTAAAATTGTTAAACCGAGCAGATTCATTTCCCCCGACAAACGAAGAGTTACACAGGCCTTGATGACATGGAATGTTACATGCACATATTCACAATTTCTGGCCCAAAAAACTCCAACCTGCTGTGTCTCACTGTCATCGTTTTACAATGACACCATTGTTTCTTGCCCAAAATGCTCTTGTGGCTGCCAGAGCAATTTGAACGGACCAGAAAGTTGTGTGGAGGCAAATTCTCCATATTTAGCCTCTGTTACCGATTCTAGTTCAAGCAAGAACAATTTGGCTCCTCTGGTTCAGTGTACGGGCCATATGTGCCCGATCCGAGTTCACTGGCATGTGAAGATTAACTATAAGGAGTATTGGCGTGTGAAGATCACAATTACAAACTTCAATTACAGGATGAACTATTCAAATTGGAACTTAGTTGTCCAGCATCCCAACTTCGACAATCTAACGCAGATTTTCAGCTTCAACTATAAGTCAATCAATCCATATGGAACGATAAATGATACTGCAATCCTGTGGGGAGTCAAGTTCTACAATGATTTGCTCATGCAAGCAGGCCCTCTTGGGAATGTGCAGACAGAGTTACTTTTCAGGAAGGACCAATCGACTTTCACGTTTGATAAAGGCTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGACAATTGTGTCATGCCACCCCCAGATGCCTATCCCTACTTACCAAACGCTGGTTCTAAGCAAGGTGTTTCGTTGTTTACTATGATGCTATTGCTGATTTCCATGACTCTCTTGTCCTTTTGA 1347 43.58 MAFPIFRLPSLFALLAIFLAFSSFLASTEAYDPLDPNGNITVKWDVINWTPDGYVAVVTLYNFQQYRHIQAPGWSLQWKWAKKEVIWSMLGGQATEQGDCSRYKGNIPHCCKRDPTIVDLLPGTPYNQQIANCCKGGVLNSWVQDPVTAVSSFQLSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSRFISPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQSNLNGPESCVEANSPYLASVTDSSSSKNNLAPLVQCTGHMCPIRVHWHVKINYKEYWRVKITITNFNYRMNYSNWNLVVQHPNFDNLTQIFSFNYKSINPYGTINDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLFTMMLLLISMTLLSF 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9754620 9760834 - Maker00018596 Lcy3g0307 627499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0307 448 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0307 448 PIRSF COBRA 4 448 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy3g0307 448 PANTHER PROTEIN COBRA 19 442 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2071 Lcy-Chr10:44773898 Lcy3g0307 Lcy-Chr3:9754620 1.00E-101 dispersed
Lcy10g2072 Lcy-Chr10:44778854 Lcy3g0307 Lcy-Chr3:9754620 7.13E-132 dispersed
Lcy2g0499 Lcy-Chr2:4284701 Lcy3g0307 Lcy-Chr3:9754620 3.70E-281 dispersed
Lcy3g0270 Lcy-Chr3:8923368 Lcy3g0307 Lcy-Chr3:9754620 4.67E-287 dispersed
Lcy3g0307 Lcy-Chr3:9754620 Lcy5g2474 Lcy-Chr5:47482896 1.17E-180 dispersed
Lcy3g0306 Lcy-Chr3:9754620 Lcy3g0307 Lcy-Chr3:9754620 1.11E-223 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0307 - - - 0.0