Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0341 ATGGGAAGAGGAAGAGTGGAATTGAAGAGAATAGAGAACAAGATAAACAGGCAAGTGACATTTGCAAAGAGAAGAAATGGACTGTTGAAGAAAGCTTATGAGCTTTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTTGAAAGGTACCAAAAATGCAGTTACGGAGCGGTGGAGGTCACGAAACCGGCCAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCGAAAGAACTTGAGCAGCTGGAGCGTCAACTAGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTATCTGACCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGACACTAAAGCTGGAAGAAATAAGTTCAAGAAACAACATAAGGCTAACATGGGAAGGTGGAGACCAGAGCATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAATCCCACTTTGCAAATTGGGTACAATGCTTCAGTATCAGACCAAATTACAGCCACCACTGCCCCAAGTCATGCCCAACAAGTCAATGGCTTTCTCCCTGGTTGGATGCTTTGA 741 43.99 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALTLKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYNASVSDQITATTAPSHAQQVNGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10647189 10656769 + Maker00018736 Lcy3g0341 627533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0341 246 FunFam MADS-box transcription factor 1 13 87 - -
Lcy3g0341 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy3g0341 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy3g0341 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy3g0341 246 Coils Coil 121 144 - -
Lcy3g0341 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0341 K09264 - - csv:101208204 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0613 Lcy-Chr13:8059563 Lcy3g0341 Lcy-Chr3:10647189 8.47E-70 dispersed
Lcy13g1639 Lcy-Chr13:35333980 Lcy3g0341 Lcy-Chr3:10647189 1.63E-34 dispersed
Lcy1g1899 Lcy-Chr1:22029667 Lcy3g0341 Lcy-Chr3:10647189 6.59E-24 dispersed
Lcy3g0341 Lcy-Chr3:10647189 Lcy3g1266 Lcy-Chr3:38446396 6.57E-98 dispersed
Lcy3g0341 Lcy-Chr3:10647189 Lcy3g0344 Lcy-Chr3:10943559 1.20E-55 proximal
Lcy9g1539 Lcy-Chr9:40485123 Lcy3g0341 Lcy-Chr3:10647189 2.78E-32 transposed
Lcy3g0341 Lcy-Chr3:10647189 Lcy8g0840 Lcy-Chr8:30364545 6.87E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1795 . 10 234 MADS-box Gene Family AT3G58780 61.7 2.6e-68 256.1
Lcy1g0239 . 7 264 MADS-box Gene Family AT3G58780 58.2 3.8e-67 252.3
Lcy3g0344 . 1 197 MADS-box Gene Family AT1G26310 60.8 2.0e-60 229.9
Lcy5g2470 . 1 157 MADS-box Gene Family AT1G26310 71.7 1.3e-59 227.3
Lcy3g0341 . 1 173 MADS-box Gene Family AT1G26310 55.1 8.5e-43 171.4
Lcy13g0613 . 1 158 MADS-box Gene Family AT1G26310 58.5 9.4e-42 167.9
Lcy3g1266 . 1 158 MADS-box Gene Family AT1G26310 56.4 1.4e-40 164.1
Lcy5g2471 . 1 158 MADS-box Gene Family AT1G26310 55.3 1.7e-38 157.1
Lcy1g0239 . 9 164 MADS-box Gene Family AT4G09960 75.6 4.1e-60 228.8
Lcy5g1795 . 15 202 MADS-box Gene Family AT4G09960 62.6 4.1e-60 228.8
Lcy13g0613 . 1 239 MADS-box Gene Family AT3G61120 55.3 3.2e-63 239.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT3G61120 51.5 1.3e-43 174.1
Lcy3g0341 . 1 173 MADS-box Gene Family AT3G61120 54.3 1.5e-41 167.2
Lcy3g1266 . 1 158 MADS-box Gene Family AT3G61120 56.3 5.5e-39 158.7
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G11880 56.3 1.0e-52 204.1
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G11880 53.4 6.2e-50 194.9
Lcy6g0207 . 109 284 MADS-box Gene Family AT4G11880 57.6 3.3e-43 172.6
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G11880 50.2 2.2e-39 159.8
Lcy12g0427 . 1 220 MADS-box Gene Family AT5G13790 50.6 6.7e-46 181.8
Lcy6g0403 . 1 224 MADS-box Gene Family AT2G22630 51.8 1.1e-54 210.7
Lcy1g0849 . 1 167 MADS-box Gene Family AT2G22630 65.3 2.6e-51 199.5
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G22950 59.9 2.8e-58 222.6
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G22950 54.6 2.7e-53 206.1
Lcy6g0207 . 109 296 MADS-box Gene Family AT4G22950 54.8 1.3e-44 177.2
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G22950 51.6 1.9e-43 173.3
Lcy3g0341 . 1 247 MADS-box Gene Family AT5G15800 73.5 1.3e-99 360.1
Lcy3g1266 . 1 227 MADS-box Gene Family AT5G15800 58.3 1.4e-69 260.4
Lcy6g0210 . 1 171 MADS-box Gene Family AT5G15800 56.3 2.0e-42 170.2
Lcy3g0344 . 1 175 MADS-box Gene Family AT5G15800 54.3 4.3e-42 169.1
Lcy5g2470 . 1 162 MADS-box Gene Family AT5G15800 54.3 4.5e-39 159.1
Lcy13g0612 . 1 161 MADS-box Gene Family AT2G45660 72.7 3.5e-55 211.8
Lcy11g1921 . 1 144 MADS-box Gene Family AT2G45660 70.1 2.1e-47 186.0
Lcy12g1715 . 1 156 MADS-box Gene Family AT2G45660 62.2 5.1e-46 181.4
Lcy6g0207 . 109 267 MADS-box Gene Family AT2G45660 59.7 5.3e-43 171.4
Lcy6g0403 . 1 225 MADS-box Gene Family AT4G37940 50.7 6.9e-54 208.0
Lcy1g0849 . 1 162 MADS-box Gene Family AT4G37940 64.8 2.7e-50 196.1
Lcy1g0831 . 1 223 MADS-box Gene Family AT2G22540 63.7 7.2e-68 254.6
Lcy13g1475 . 1 225 MADS-box Gene Family AT2G22540 58.0 1.7e-61 233.4
Lcy6g0395 . 1 152 MADS-box Gene Family AT2G22540 59.6 5.2e-42 168.7
Lcy13g1475 . 1 225 MADS-box Gene Family AT4G24540 58.1 1.3e-60 230.3
Lcy1g0831 . 1 223 MADS-box Gene Family AT4G24540 56.7 1.1e-57 220.7
Lcy6g0395 . 1 152 MADS-box Gene Family AT4G24540 54.5 5.5e-38 155.2
Lcy3g0341 . 1 171 MADS-box Gene Family AT2G03710 66.9 2.0e-57 219.5
Lcy3g1266 . 1 158 MADS-box Gene Family AT2G03710 66.7 9.0e-50 194.1
Lcy5g2471 . 1 159 MADS-box Gene Family AT2G03710 58.6 6.7e-45 177.9
Lcy13g0613 . 1 182 MADS-box Gene Family AT2G03710 51.4 8.2e-43 171.0
Lcy3g0344 . 1 173 MADS-box Gene Family AT2G03710 50.6 1.2e-38 157.1
Lcy3g0341 . 1 170 MADS-box Gene Family AT3G02310 86.5 5.4e-77 284.6
Lcy3g1266 . 1 186 MADS-box Gene Family AT3G02310 69.4 2.6e-63 239.2
Lcy13g0613 . 1 179 MADS-box Gene Family AT3G02310 60.4 1.6e-49 193.4
Lcy5g2471 . 1 158 MADS-box Gene Family AT3G02310 61.0 8.2e-49 191.0
Lcy6g0210 . 1 168 MADS-box Gene Family AT3G02310 56.7 1.3e-41 167.2
Lcy3g0344 . 1 181 MADS-box Gene Family AT3G02310 53.6 2.2e-41 166.4
Lcy5g2470 . 1 160 MADS-box Gene Family AT3G02310 55.6 2.4e-40 162.9
Lcy6g0207 . 109 254 MADS-box Gene Family AT5G62165 64.4 5.0e-46 181.4
Lcy13g0612 . 1 153 MADS-box Gene Family AT5G62165 56.9 1.9e-42 169.5
Lcy12g1715 . 1 154 MADS-box Gene Family AT5G62165 56.5 4.8e-41 164.9
Lcy11g1921 . 1 144 MADS-box Gene Family AT5G62165 59.6 4.1e-40 161.8
Lcy6g0403 . 1 235 MADS-box Gene Family AT2G14210 54.2 9.6e-57 217.6
Lcy1g0849 . 1 142 MADS-box Gene Family AT2G14210 67.1 1.2e-46 184.1
Lcy5g1795 . 10 234 MADS-box Gene Family AT2G42830 58.4 3.2e-63 239.2
Lcy1g0239 . 7 164 MADS-box Gene Family AT2G42830 75.9 2.1e-62 236.5
Lcy13g0613 . 1 244 MADS-box Gene Family AT2G45650 64.0 5.4e-82 301.6
Lcy3g0344 . 1 169 MADS-box Gene Family AT2G45650 51.5 4.8e-38 155.6
Lcy1g0239 . 9 164 MADS-box Gene Family AT2G45650 51.9 6.2e-38 155.2
Lcy5g2471 . 1 158 MADS-box Gene Family AT2G45650 57.0 1.8e-37 153.7
Lcy6g0207 . 102 253 MADS-box Gene Family AT5G51870 54.6 8.0e-41 164.5
Lcy3g0344 . 1 210 MADS-box Gene Family AT3G30260 53.2 3.5e-49 192.6
Lcy5g2470 . 1 157 MADS-box Gene Family AT3G30260 64.3 2.5e-47 186.4
Lcy3g1266 . 1 228 MADS-box Gene Family AT1G24260 76.8 3.0e-90 328.9
Lcy3g0341 . 1 245 MADS-box Gene Family AT1G24260 60.2 2.6e-70 262.7
Lcy13g0613 . 1 242 MADS-box Gene Family AT1G24260 50.8 1.2e-51 200.7
Lcy5g2470 . 1 158 MADS-box Gene Family AT1G24260 54.5 4.8e-40 162.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT1G24260 53.4 1.1e-39 161.0
Lcy9g2236 . 1 231 MADS-box Gene Family AT3G54340 59.5 1.7e-69 260.0
Lcy9g1539 . 1 139 MADS-box Gene Family AT5G20240 71.9 2.4e-53 205.7
Lcy9g1539 . 1 139 MADS-box Gene Family AT5G20240 71.9 2.4e-53 205.7
Lcy9g2236 . 1 231 MADS-box Gene Family AT3G54340 59.5 1.7e-69 260.0
Lcy5g1795 . 10 234 MADS-box Gene Family AT3G58780 61.7 2.6e-68 256.1
Lcy1g0239 . 7 264 MADS-box Gene Family AT3G58780 58.2 3.8e-67 252.3
Lcy3g0341 . 1 247 MADS-box Gene Family AT5G15800 73.5 1.3e-99 360.1
Lcy3g1266 . 1 227 MADS-box Gene Family AT5G15800 58.3 1.4e-69 260.4
Lcy6g0210 . 1 171 MADS-box Gene Family AT5G15800 56.3 2.0e-42 170.2
Lcy3g0344 . 1 175 MADS-box Gene Family AT5G15800 54.3 4.3e-42 169.1
Lcy5g2470 . 1 162 MADS-box Gene Family AT5G15800 54.3 4.5e-39 159.1
Lcy3g0341 . 1 171 MADS-box Gene Family AT2G03710 66.9 2.0e-57 219.5
Lcy3g1266 . 1 158 MADS-box Gene Family AT2G03710 66.7 9.0e-50 194.1
Lcy5g2471 . 1 159 MADS-box Gene Family AT2G03710 58.6 6.7e-45 177.9
Lcy13g0613 . 1 182 MADS-box Gene Family AT2G03710 51.4 8.2e-43 171.0
Lcy3g0344 . 1 173 MADS-box Gene Family AT2G03710 50.6 1.2e-38 157.1
Lcy3g0341 . 1 170 MADS-box Gene Family AT3G02310 86.5 5.4e-77 284.6
Lcy3g1266 . 1 186 MADS-box Gene Family AT3G02310 69.4 2.6e-63 239.2
Lcy13g0613 . 1 179 MADS-box Gene Family AT3G02310 60.4 1.6e-49 193.4
Lcy5g2471 . 1 158 MADS-box Gene Family AT3G02310 61.0 8.2e-49 191.0
Lcy6g0210 . 1 168 MADS-box Gene Family AT3G02310 56.7 1.3e-41 167.2
Lcy3g0344 . 1 181 MADS-box Gene Family AT3G02310 53.6 2.2e-41 166.4
Lcy5g2470 . 1 160 MADS-box Gene Family AT3G02310 55.6 2.4e-40 162.9
Lcy5g1795 . 10 234 MADS-box Gene Family AT2G42830 58.4 3.2e-63 239.2
Lcy1g0239 . 7 164 MADS-box Gene Family AT2G42830 75.9 2.1e-62 236.5
Lcy13g0613 . 1 244 MADS-box Gene Family AT2G45650 64.0 5.4e-82 301.6
Lcy3g0344 . 1 169 MADS-box Gene Family AT2G45650 51.5 4.8e-38 155.6
Lcy1g0239 . 9 164 MADS-box Gene Family AT2G45650 51.9 6.2e-38 155.2
Lcy5g2471 . 1 158 MADS-box Gene Family AT2G45650 57.0 1.8e-37 153.7
Lcy3g1266 . 1 228 MADS-box Gene Family AT1G24260 76.8 3.0e-90 328.9
Lcy3g0341 . 1 245 MADS-box Gene Family AT1G24260 60.2 2.6e-70 262.7
Lcy13g0613 . 1 242 MADS-box Gene Family AT1G24260 50.8 1.2e-51 200.7
Lcy5g2470 . 1 158 MADS-box Gene Family AT1G24260 54.5 4.8e-40 162.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT1G24260 53.4 1.1e-39 161.0
Lcy3g0344 . 1 197 MADS-box Gene Family AT1G26310 60.8 2.0e-60 229.9
Lcy5g2470 . 1 157 MADS-box Gene Family AT1G26310 71.7 1.3e-59 227.3
Lcy3g0341 . 1 173 MADS-box Gene Family AT1G26310 55.1 8.5e-43 171.4
Lcy13g0613 . 1 158 MADS-box Gene Family AT1G26310 58.5 9.4e-42 167.9
Lcy3g1266 . 1 158 MADS-box Gene Family AT1G26310 56.4 1.4e-40 164.1
Lcy5g2471 . 1 158 MADS-box Gene Family AT1G26310 55.3 1.7e-38 157.1
Lcy1g0239 . 9 164 MADS-box Gene Family AT4G09960 75.6 4.1e-60 228.8
Lcy5g1795 . 15 202 MADS-box Gene Family AT4G09960 62.6 4.1e-60 228.8
Lcy13g0613 . 1 239 MADS-box Gene Family AT3G61120 55.3 3.2e-63 239.2
Lcy6g0210 . 1 171 MADS-box Gene Family AT3G61120 51.5 1.3e-43 174.1
Lcy3g0341 . 1 173 MADS-box Gene Family AT3G61120 54.3 1.5e-41 167.2
Lcy3g1266 . 1 158 MADS-box Gene Family AT3G61120 56.3 5.5e-39 158.7
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G11880 56.3 1.0e-52 204.1
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G11880 53.4 6.2e-50 194.9
Lcy6g0207 . 109 284 MADS-box Gene Family AT4G11880 57.6 3.3e-43 172.6
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G11880 50.2 2.2e-39 159.8
Lcy12g0427 . 1 220 MADS-box Gene Family AT5G13790 50.6 6.7e-46 181.8
Lcy6g0403 . 1 224 MADS-box Gene Family AT2G22630 51.8 1.1e-54 210.7
Lcy1g0849 . 1 167 MADS-box Gene Family AT2G22630 65.3 2.6e-51 199.5
Lcy12g1715 . 1 213 MADS-box Gene Family AT4G22950 59.9 2.8e-58 222.6
Lcy13g0612 . 1 218 MADS-box Gene Family AT4G22950 54.6 2.7e-53 206.1
Lcy6g0207 . 109 296 MADS-box Gene Family AT4G22950 54.8 1.3e-44 177.2
Lcy11g1921 . 1 199 MADS-box Gene Family AT4G22950 51.6 1.9e-43 173.3
Lcy13g0612 . 1 161 MADS-box Gene Family AT2G45660 72.7 3.5e-55 211.8
Lcy11g1921 . 1 144 MADS-box Gene Family AT2G45660 70.1 2.1e-47 186.0
Lcy12g1715 . 1 156 MADS-box Gene Family AT2G45660 62.2 5.1e-46 181.4
Lcy6g0207 . 109 267 MADS-box Gene Family AT2G45660 59.7 5.3e-43 171.4
Lcy6g0403 . 1 225 MADS-box Gene Family AT4G37940 50.7 6.9e-54 208.0
Lcy1g0849 . 1 162 MADS-box Gene Family AT4G37940 64.8 2.7e-50 196.1
Lcy1g0831 . 1 223 MADS-box Gene Family AT2G22540 63.7 7.2e-68 254.6
Lcy13g1475 . 1 225 MADS-box Gene Family AT2G22540 58.0 1.7e-61 233.4
Lcy6g0395 . 1 152 MADS-box Gene Family AT2G22540 59.6 5.2e-42 168.7
Lcy13g1475 . 1 225 MADS-box Gene Family AT4G24540 58.1 1.3e-60 230.3
Lcy1g0831 . 1 223 MADS-box Gene Family AT4G24540 56.7 1.1e-57 220.7
Lcy6g0395 . 1 152 MADS-box Gene Family AT4G24540 54.5 5.5e-38 155.2
Lcy6g0207 . 109 254 MADS-box Gene Family AT5G62165 64.4 5.0e-46 181.4
Lcy13g0612 . 1 153 MADS-box Gene Family AT5G62165 56.9 1.9e-42 169.5
Lcy12g1715 . 1 154 MADS-box Gene Family AT5G62165 56.5 4.8e-41 164.9
Lcy11g1921 . 1 144 MADS-box Gene Family AT5G62165 59.6 4.1e-40 161.8
Lcy6g0403 . 1 235 MADS-box Gene Family AT2G14210 54.2 9.6e-57 217.6
Lcy1g0849 . 1 142 MADS-box Gene Family AT2G14210 67.1 1.2e-46 184.1
Lcy6g0207 . 102 253 MADS-box Gene Family AT5G51870 54.6 8.0e-41 164.5
Lcy3g0344 . 1 210 MADS-box Gene Family AT3G30260 53.2 3.5e-49 192.6
Lcy5g2470 . 1 157 MADS-box Gene Family AT3G30260 64.3 2.5e-47 186.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000282 9 8 5 10 6 4 8 4 4 3 4 4 6 4 4 6 4 4 5 4 4 4 4 4 3 4 4 4 6 4 147
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19801 None None None None Lcy TF