Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0341 ATGGGAAGAGGAAGAGTGGAATTGAAGAGAATAGAGAACAAGATAAACAGGCAAGTGACATTTGCAAAGAGAAGAAATGGACTGTTGAAGAAAGCTTATGAGCTTTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTTGAAAGGTACCAAAAATGCAGTTACGGAGCGGTGGAGGTCACGAAACCGGCCAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCGAAAGAACTTGAGCAGCTGGAGCGTCAACTAGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTATCTGACCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGACACTAAAGCTGGAAGAAATAAGTTCAAGAAACAACATAAGGCTAACATGGGAAGGTGGAGACCAGAGCATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAATCCCACTTTGCAAATTGGGTACAATGCTTCAGTATCAGACCAAATTACAGCCACCACTGCCCCAAGTCATGCCCAACAAGTCAATGGCTTTCTCCCTGGTTGGATGCTTTGA 741 43.99 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALTLKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYNASVSDQITATTAPSHAQQVNGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10647189 10656769 + Maker00018736 Lcy3g0341 627533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0341 246 FunFam MADS-box transcription factor 1 13 87 - -
Lcy3g0341 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy3g0341 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy3g0341 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0341 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy3g0341 246 Coils Coil 121 144 - -
Lcy3g0341 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0613 Lcy-Chr13:8059563 Lcy3g0341 Lcy-Chr3:10647189 8.47E-70 dispersed
Lcy13g1639 Lcy-Chr13:35333980 Lcy3g0341 Lcy-Chr3:10647189 1.63E-34 dispersed
Lcy1g1899 Lcy-Chr1:22029667 Lcy3g0341 Lcy-Chr3:10647189 6.59E-24 dispersed
Lcy3g0341 Lcy-Chr3:10647189 Lcy3g1266 Lcy-Chr3:38446396 6.57E-98 dispersed
Lcy3g0341 Lcy-Chr3:10647189 Lcy3g0344 Lcy-Chr3:10943559 1.20E-55 proximal
Lcy9g1539 Lcy-Chr9:40485123 Lcy3g0341 Lcy-Chr3:10647189 2.78E-32 transposed
Lcy3g0341 Lcy-Chr3:10647189 Lcy8g0840 Lcy-Chr8:30364545 6.87E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19801 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0341 K09264 - csv:101208204 462.225