Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0344 ATGGGAAGAGGGAGAGTTCAGCTCAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCTAAGCGCAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTCCTTTGCGATGCTGATGTTGCTTTGATCGTCTTCTCCACCAAGGGAAAGCTCTTTGAGTACTCCACTGAATCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAAACCATTGGCTCCAAATGGAGATTCTGAATTACAGGTAAGTTGGACTCAGGAGTACCCAAAATTTGCAGCCAGACTGGAGATTGTACAGAAGAACATAAGGCATTATTTGGGAGAAGATCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCTAGAAAGAACCAATTGATGCAAGAATCCATTTCAAAGCTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTAGCAAATAAGGTAAAGGAGAATGAGAAAATTTTGGTTGAACGTGGACACTGCGAACTCCCAAACTTGGTTCAAAGTCAGCCCTTTTTTGCTGTGCCACCATCGGTTCCTTCTTTATCTATTGGGTATGTCTTCTTTTCTCTCTTTTAA 654 42.05 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTESSMEKILEKYERYSYAEKPLAPNGDSELQVSWTQEYPKFAARLEIVQKNIRHYLGEDLDPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISKLHKKERELQEENRQLANKVKENEKILVERGHCELPNLVQSQPFFAVPPSVPSLSIGYVFFSLF 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10943559 10949817 + Maker00018678 Lcy3g0344 627536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0344 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lcy3g0344 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy3g0344 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 Pfam K-box region 89 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy3g0344 217 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy3g0344 217 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy3g0344 217 Coils Coil 123 182 - -
Lcy3g0344 217 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy3g0344 217 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0064 Lcy-Chr1:527054 Lcy3g0344 Lcy-Chr3:10943559 6.40E-30 dispersed
Lcy3g0344 Lcy-Chr3:10943559 Lcy5g2470 Lcy-Chr5:47435771 5.43E-73 dispersed
Lcy3g0341 Lcy-Chr3:10647189 Lcy3g0344 Lcy-Chr3:10943559 1.20E-55 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19802 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0344 K09264 - csv:101218674 349.747