Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0403 ATGTCGCCTGTTGATTCTTCACGGGAGGAAAATGTTTACATGGCCAAGTTGGCCGAACAGGCAGAACGGTATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAGACTGTGGATGTTGAGGAGCTGACTGTTGAGGAGAGGAATCTCCTCTCTGTTGCTTACAAGAATGTCATTGGGGCTCGGAGGGCCTCGTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGAGAGTCGGGGAAACGAGGACCATGTTGCAATTATCAAGGAGTACCGTGGCAAAATCGAAACTGAACTGAGCAAGATCTGTGATGGGATTTTGAGCCTACTTGAGTCTCATCTCATCCCATCGGCCTCATCTGCCGAATCAAAGGTGTTTTATCTCAAAATGAAAGGTGACTACCACAGGTACCTGGCTGAGTTTAAGACTGGCGCTGAAAGGAAAGAAGCAGCTGAGAGCACATTATTAGCCTACAAGTCTGCTCAGGATATTGCTCTTGCTGAATTGGCTCCTACTCATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTTAATTCGCCAGACCGCGCTTGCAATTTGGCAAAGCAGGCTTTTGACGAAGCAATTTCTGAGCTTGACACATTGGGTGAAGAATCATACAAGGATAGCACCTTGATCATGCAACTCCTCCGAGACAACTTGACCCTTTGGACTTCTGATGTTGGGGATGAAGCTGGCGATGAGATTAAGGAAGCATCGAAACGTGAATCAGGAGAGGGACATGGACAGTAG 792 46.59 MSPVDSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDVGDEAGDEIKEASKRESGEGHGQ 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13416201 13419005 - Maker00018484 Lcy3g0403 627595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0403 263 SMART 1433_4 8 251 IPR023410 -
Lcy3g0403 263 PIRSF 14-3-3 3 250 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Lcy3g0403 263 Pfam 14-3-3 protein 14 238 IPR023410 -
Lcy3g0403 263 Coils Coil 14 34 - -
Lcy3g0403 263 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Lcy3g0403 263 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Lcy3g0403 263 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Lcy3g0403 263 Gene3D - 2 251 IPR036815 -
Lcy3g0403 263 FunFam 14-3-3 protein epsilon 4 251 - -
Lcy3g0403 263 PANTHER 14-3-3 PROTEIN 7 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0403 K06630 - - csv:101222068 507.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1460 Lcy-Chr13:33156297 Lcy3g0403 Lcy-Chr3:13416201 1.12E-114 dispersed
Lcy13g1561 Lcy-Chr13:34461817 Lcy3g0403 Lcy-Chr3:13416201 1.59E-110 dispersed
Lcy3g0403 Lcy-Chr3:13416201 Lcy9g1719 Lcy-Chr9:42390305 2.13E-145 dispersed
Lcy3g0403 Lcy-Chr3:13416201 Lcy13g1545 Lcy-Chr13:34264363 3.03E-148 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1545 . 4 242 14-3-3 family AT4G09000 90.4 1.6e-118 423.3
Lcy9g1719 . 5 242 14-3-3 family AT4G09000 90.3 3.5e-118 422.2
Lcy3g0403 . 6 241 14-3-3 family AT4G09000 86.4 4.8e-112 401.7
Lcy13g1460 . 10 298 14-3-3 family AT4G09000 61.2 1.5e-89 327.0
Lcy9g1731 . 5 236 14-3-3 family AT4G09000 71.8 1.4e-87 320.5
Lcy13g1561 . 5 246 14-3-3 family AT4G09000 67.2 4.1e-87 318.9
Lcy4g0704 . 4 285 14-3-3 family AT4G09000 60.2 4.6e-86 315.5
Lcy7g0331 . 4 204 14-3-3 family AT4G09000 62.2 3.2e-71 266.2
Lcy13g1545 . 6 262 14-3-3 family AT1G78300 89.9 4.5e-124 441.4
Lcy9g1719 . 5 258 14-3-3 family AT1G78300 89.4 5.0e-123 438.0
Lcy3g0403 . 6 253 14-3-3 family AT1G78300 87.5 3.1e-117 418.7
Lcy13g1460 . 11 299 14-3-3 family AT1G78300 62.3 2.9e-91 332.4
Lcy9g1731 . 1 248 14-3-3 family AT1G78300 69.2 4.7e-89 325.1
Lcy13g1561 . 1 252 14-3-3 family AT1G78300 66.5 1.0e-88 323.9
Lcy4g0704 . 7 302 14-3-3 family AT1G78300 59.1 2.6e-87 319.3
Lcy7g0331 . 8 228 14-3-3 family AT1G78300 60.9 6.1e-73 271.6
Lcy3g0403 . 6 259 14-3-3 family AT5G38480 90.2 2.9e-123 438.7
Lcy13g1545 . 6 252 14-3-3 family AT5G38480 85.8 1.4e-114 409.8
Lcy9g1719 . 6 252 14-3-3 family AT5G38480 85.0 7.0e-114 407.5
Lcy13g1561 . 5 250 14-3-3 family AT5G38480 71.4 1.9e-90 329.7
Lcy13g1460 . 10 303 14-3-3 family AT5G38480 61.6 2.1e-89 326.2
Lcy9g1731 . 5 242 14-3-3 family AT5G38480 71.3 2.5e-87 319.3
Lcy4g0704 . 7 294 14-3-3 family AT5G38480 60.3 1.1e-85 313.9
Lcy7g0331 . 8 223 14-3-3 family AT5G38480 63.6 4.9e-75 278.5
Lcy13g1545 . 3 242 14-3-3 family AT1G35160 90.4 4.9e-119 424.9
Lcy9g1719 . 4 242 14-3-3 family AT1G35160 89.5 5.5e-118 421.4
Lcy3g0403 . 6 240 14-3-3 family AT1G35160 86.4 2.2e-111 399.4
Lcy13g1460 . 1 298 14-3-3 family AT1G35160 60.7 6.3e-90 328.2
Lcy9g1731 . 5 236 14-3-3 family AT1G35160 72.2 5.9e-88 321.6
Lcy13g1561 . 5 246 14-3-3 family AT1G35160 66.8 3.8e-87 318.9
Lcy4g0704 . 2 284 14-3-3 family AT1G35160 60.0 1.6e-85 313.5
Lcy7g0331 . 8 204 14-3-3 family AT1G35160 62.4 1.9e-70 263.5
Lcy3g0403 . 5 254 14-3-3 family AT5G16050 86.0 1.2e-116 416.8
Lcy13g1545 . 3 253 14-3-3 family AT5G16050 78.9 4.7e-108 388.3
Lcy9g1719 . 4 251 14-3-3 family AT5G16050 78.3 1.1e-104 377.1
Lcy13g1460 . 10 300 14-3-3 family AT5G16050 58.8 3.6e-84 308.9
Lcy4g0704 . 86 293 14-3-3 family AT5G16050 71.3 8.3e-81 297.7
Lcy13g1561 . 2 252 14-3-3 family AT5G16050 62.8 1.4e-80 297.0
Lcy9g1731 . 5 239 14-3-3 family AT5G16050 66.2 1.2e-79 293.9
Lcy7g0331 . 3 211 14-3-3 family AT5G16050 55.3 1.1e-64 244.2
Lcy13g1460 . 9 298 14-3-3 family AT5G10450 72.4 3.4e-106 382.1
Lcy13g1545 . 3 251 14-3-3 family AT5G10450 77.2 6.4e-105 377.9
Lcy9g1719 . 1 242 14-3-3 family AT5G10450 78.2 7.8e-103 370.9
Lcy3g0403 . 7 259 14-3-3 family AT5G10450 73.6 1.3e-102 370.2
Lcy9g1731 . 5 236 14-3-3 family AT5G10450 67.2 4.0e-83 305.4
Lcy13g1561 . 5 246 14-3-3 family AT5G10450 64.9 5.3e-83 305.1
Lcy4g0704 . 1 285 14-3-3 family AT5G10450 55.4 1.4e-80 297.0
Lcy7g0331 . 3 204 14-3-3 family AT5G10450 57.1 1.0e-65 247.7
Lcy3g0403 . 4 260 14-3-3 family AT3G02520 91.1 1.2e-127 453.4
Lcy13g1545 . 6 252 14-3-3 family AT3G02520 86.3 9.3e-117 417.2
Lcy9g1719 . 5 258 14-3-3 family AT3G02520 83.2 1.7e-115 412.9
Lcy13g1460 . 10 300 14-3-3 family AT3G02520 62.5 1.3e-91 333.6
Lcy13g1561 . 1 249 14-3-3 family AT3G02520 67.7 8.2e-89 324.3
Lcy9g1731 . 1 248 14-3-3 family AT3G02520 69.2 4.1e-88 322.0
Lcy4g0704 . 4 285 14-3-3 family AT3G02520 59.9 4.6e-84 308.5
Lcy7g0331 . 8 228 14-3-3 family AT3G02520 59.7 3.7e-73 272.3
Lcy13g1460 . 9 298 14-3-3 family AT5G65430 72.8 6.5e-107 384.4
Lcy13g1545 . 8 242 14-3-3 family AT5G65430 80.1 3.4e-103 372.1
Lcy3g0403 . 7 241 14-3-3 family AT5G65430 78.8 4.4e-103 371.7
Lcy9g1719 . 1 242 14-3-3 family AT5G65430 78.2 1.7e-102 369.8
Lcy9g1731 . 5 236 14-3-3 family AT5G65430 68.9 2.0e-84 309.7
Lcy13g1561 . 5 246 14-3-3 family AT5G65430 66.5 2.0e-84 309.7
Lcy4g0704 . 1 285 14-3-3 family AT5G65430 56.8 7.3e-82 301.2
Lcy7g0331 . 8 204 14-3-3 family AT5G65430 60.0 1.3e-67 253.8
Lcy4g0704 . 1 310 14-3-3 family AT2G42590 68.6 4.6e-111 398.3
Lcy9g1731 . 3 240 14-3-3 family AT2G42590 76.9 2.6e-101 365.9
Lcy13g1561 . 3 252 14-3-3 family AT2G42590 74.8 9.7e-101 364.0
Lcy3g0403 . 8 248 14-3-3 family AT2G42590 73.0 1.1e-91 334.0
Lcy9g1719 . 8 245 14-3-3 family AT2G42590 71.0 1.2e-90 330.5
Lcy13g1545 . 8 248 14-3-3 family AT2G42590 70.1 3.5e-90 328.9
Lcy7g0331 . 6 222 14-3-3 family AT2G42590 63.6 8.5e-81 297.7
Lcy13g1460 . 11 300 14-3-3 family AT2G42590 53.1 5.0e-73 271.9
Lcy13g1561 . 1 250 14-3-3 family AT1G22300 77.2 1.8e-101 366.3
Lcy9g1731 . 1 240 14-3-3 family AT1G22300 77.1 2.4e-98 355.9
Lcy4g0704 . 6 289 14-3-3 family AT1G22300 64.8 1.9e-95 346.3
Lcy3g0403 . 4 246 14-3-3 family AT1G22300 70.4 8.3e-91 330.9
Lcy13g1545 . 8 246 14-3-3 family AT1G22300 69.5 8.6e-88 320.9
Lcy9g1719 . 8 245 14-3-3 family AT1G22300 68.5 5.6e-87 318.2
Lcy7g0331 . 5 209 14-3-3 family AT1G22300 66.3 7.8e-81 297.7
Lcy13g1460 . 11 300 14-3-3 family AT1G22300 54.1 3.0e-72 269.2
Lcy13g1561 . 1 250 14-3-3 family AT1G34760 75.6 4.4e-100 361.7
Lcy9g1731 . 1 243 14-3-3 family AT1G34760 78.6 5.7e-100 361.3
Lcy4g0704 . 72 293 14-3-3 family AT1G34760 80.6 1.2e-97 353.6
Lcy3g0403 . 4 250 14-3-3 family AT1G34760 70.4 6.0e-89 324.7
Lcy13g1545 . 8 243 14-3-3 family AT1G34760 71.6 3.9e-88 322.0
Lcy9g1719 . 8 249 14-3-3 family AT1G34760 69.4 8.6e-88 320.9
Lcy7g0331 . 5 212 14-3-3 family AT1G34760 69.5 1.3e-83 307.0
Lcy13g1460 . 11 299 14-3-3 family AT1G34760 52.6 4.7e-70 261.9
Lcy4g0704 . 3 289 14-3-3 family AT1G26480 66.9 2.7e-100 362.5
Lcy9g1731 . 3 244 14-3-3 family AT1G26480 76.4 3.6e-100 362.1
Lcy13g1561 . 2 250 14-3-3 family AT1G26480 74.3 1.4e-99 360.1
Lcy7g0331 . 2 219 14-3-3 family AT1G26480 73.5 6.5e-94 341.3
Lcy9g1719 . 8 247 14-3-3 family AT1G26480 73.8 1.6e-92 336.7
Lcy13g1545 . 8 260 14-3-3 family AT1G26480 71.7 2.7e-92 335.9
Lcy3g0403 . 5 256 14-3-3 family AT1G26480 72.0 5.2e-91 331.6
Lcy13g1460 . 11 296 14-3-3 family AT1G26480 54.5 1.9e-72 270.0
Lcy9g1731 . 1 234 14-3-3 family AT1G78220 50.6 3.9e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000486 6 4 5 6 5 2 5 3 3 3 3 3 6 3 2 6 3 6 6 3 3 3 3 3 3 3 3 6 4 0 114