Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0403 ATGTCGCCTGTTGATTCTTCACGGGAGGAAAATGTTTACATGGCCAAGTTGGCCGAACAGGCAGAACGGTATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAGACTGTGGATGTTGAGGAGCTGACTGTTGAGGAGAGGAATCTCCTCTCTGTTGCTTACAAGAATGTCATTGGGGCTCGGAGGGCCTCGTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGAGAGTCGGGGAAACGAGGACCATGTTGCAATTATCAAGGAGTACCGTGGCAAAATCGAAACTGAACTGAGCAAGATCTGTGATGGGATTTTGAGCCTACTTGAGTCTCATCTCATCCCATCGGCCTCATCTGCCGAATCAAAGGTGTTTTATCTCAAAATGAAAGGTGACTACCACAGGTACCTGGCTGAGTTTAAGACTGGCGCTGAAAGGAAAGAAGCAGCTGAGAGCACATTATTAGCCTACAAGTCTGCTCAGGATATTGCTCTTGCTGAATTGGCTCCTACTCATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTTAATTCGCCAGACCGCGCTTGCAATTTGGCAAAGCAGGCTTTTGACGAAGCAATTTCTGAGCTTGACACATTGGGTGAAGAATCATACAAGGATAGCACCTTGATCATGCAACTCCTCCGAGACAACTTGACCCTTTGGACTTCTGATGTTGGGGATGAAGCTGGCGATGAGATTAAGGAAGCATCGAAACGTGAATCAGGAGAGGGACATGGACAGTAG 792 46.59 MSPVDSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDVGDEAGDEIKEASKRESGEGHGQ 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13416201 13419005 - Maker00018484 Lcy3g0403 627595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0403 263 SMART 1433_4 8 251 IPR023410 -
Lcy3g0403 263 PIRSF 14-3-3 3 250 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Lcy3g0403 263 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Lcy3g0403 263 Pfam 14-3-3 protein 14 238 IPR023410 -
Lcy3g0403 263 Coils Coil 14 34 - -
Lcy3g0403 263 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Lcy3g0403 263 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Lcy3g0403 263 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Lcy3g0403 263 Gene3D - 2 251 IPR036815 -
Lcy3g0403 263 FunFam 14-3-3 protein epsilon 4 251 - -
Lcy3g0403 263 PANTHER 14-3-3 PROTEIN 7 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1460 Lcy-Chr13:33156297 Lcy3g0403 Lcy-Chr3:13416201 1.12E-114 dispersed
Lcy13g1561 Lcy-Chr13:34461817 Lcy3g0403 Lcy-Chr3:13416201 1.59E-110 dispersed
Lcy3g0403 Lcy-Chr3:13416201 Lcy9g1719 Lcy-Chr9:42390305 2.13E-145 dispersed
Lcy3g0403 Lcy-Chr3:13416201 Lcy13g1545 Lcy-Chr13:34264363 3.03E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0403 K06630 - csv:101222068 507.294