Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0415 ATGGGTTCCTCTTCGTCCTCCTTTTCAGTCATCAAATGGTTCTCTTCTTCCTCCCACACCTCGCCAATACTTCTCTCCAAGCTCTTTTTTCTTTTCTGCTTCCTCGTCTTCTTTCAGACTCAACTTATTTCCGGCAATTCCGACAAATCGCTTCTTCTTCACTTCAAAAATGCTGTTTCCGACCCATCGGGTTTGCTTTCCAGCTGGACTGCCACTGGCTCTGAATACTGCTTCTGGTTTGGCGTTTCCTGCGACTTGAATTCTCGGGTTGTGTCGCTCAACATTTCCGGGAATGGTGGTGCAGGTAATTCGAACGGTTTTTTCTGCTCTGATTCTTCTAAATTTCCTCTTTATGGACTTGGAATCAGGAGGGGTTGTGTCGGTTCTAGAGGCTCACTGATTGGGAAGCTTCCGCCGGTTATTGGGAAGCTCACTCAGCTTAGGACTTTGTCGCTTCCGTTTAATGGTTTTCAGGGTGAAATTCCTACTGAAATCTTGGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGAAACTCTGTCACTGGGGTGCTTCCTAATGATTTTGAGAGGCTGGGCAAGTTGCGGGTTCTCAATCTTGGATTCAATAGGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTGCGAGTTTAGAGACCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCACAGTTTGTTGGTCGGTTGAAAGGGGTCTACTTGTCTTTCAATCTTTTTACAGGATCCATTCCAATTGAGCTTGGGAATAACTGTGAGAAGCTTGAGCATCTCGACCTGTCTGGTAATTTTTTGGTCAGTGGGATTCCGAGCAATTTGGGAAATTGCAGTCAGTTGCAGACACTGTTGCTGTATTCTAATATGCTGGAGGAGGCCATTCCAGATGAAATTGGTAAGTTGCAGAAGCTGGAAGTGCTTGATCTTTCGAGGAATAGCCTCAGTGGTCCGATACCCTCTGAGCTGGGAAACTGCTTGCAGTTGTCTGTGCTTGTGCTCTCGAATCTCTTCAATCCGATTCCCAAGATCAATTACACAGATGAAGACTCTCCAACTGAGGAACTTAGTGATGATAGTTTCAACTATTTTGCGGGGGGTATACCTGAGTCAGTAACGACCCTTCCAAAGCTGAGGATATTGTGGGCCCCTAGTGCAAACCTCAATGGCAGATTCCCTTCCCAATGGGCTAAATGTGAAAGCTTGGAGATGATCAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCCAGTGGGTTTAGCGTCTGCAAAAAGCTCCAAATCCTTGATTTAAGCTCAAACCGGCTTTCTGGAGAACTTGATAAAAACCTTCCAGTTCCTTATATGACTCTGTTTGATATTAGCGGTAACCACTTAGTTGGTACGATTCCTAATGAGTGTGGCAATGATTGCTCACCACCGACGTTCCATTCAAAGGGATATTTGGATCTTGATGATGCATCGTCTCGGTATCTTGCTTTTTTTGCGAGTAGCATTCGAAGTGCAACACCTTTTGAATTTCTTGGAGATGGTGATCTGATAGTACATAACTTTGGGGAGAACAACTTTACAGGCAATCTTCTGTCACTTCCATTCCCTCGCGAAAGACTGGGAAAGAAAACTATTTATGCTTTTCTTGTAGGTGGTAATAAGCTCACCGGACCGTTCCCTGATAGTATATTTGAGAAATGCGAGGATTTGGGGGGACTGATCTTTAATATTAGCAACAATAAAATATCAGGTCCATTTTCTGTGACGATTGGTAAAAAGTGCGGTTCTCTCAAGTTCTTGGATGCATCCGGTAATCAGATGACTGGGCAGGTACCTCTGAGCTTTGGAGAGCTACGGGCTCTGAATCACCTGAACCTAAGTTGGAACAAGTTTCAGTATCAAATACCGACTTCTCTTGGACAGATGGCTGATTTGAAGTACCTTTGTTTGGCTGGCAATAACTTTAATGGTTCTATACCTTCGACCTTGGGAAAGTTGCAGTCTTTGGAATTGCTGGATCTTTCGTATAACTTTCTTTCGGGTGAAATTCCGAAAGAACTTGTTAACTTGAGAGGTCTAAAAGTTCTGTTACTCAACAATAATTCTCTTTCTGGACAGGTTCCCTCTGGGTTGGCAAACGTTACCACACTCTCTGCATTTAATGTGTCGTTCAATAACCTGTCTGGTTCCCTGCCATCAAATAATATGATTAAATGCAGTGGTGCGATCGGAAATCCTTACCTACGCCCGTGCCATATGTTTTCTCTTGCAGTGCCATCATCCGAAATGCAAGGCTCAGTTGGTGACCCGAGTAGTCTAGCAGCTTCACCTTCTAGTGTTGCACCTCAAACAAGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACCTCTGCCTCAGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTGTTTCTATATACCCGAAAGTGGAACTCGAGGTCTAAAGTTCTTGGATCAATGAGAAAGGAAGTGACGGTTTTTACTGATATTGGGGTTTCCCTGACATTTGAGAATGTAGTGCGTGCCACGAACAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAAGCAGAGATTGCGTCGGGAGTGCTTGTTGCAATAAAACGGCTTGCTGTAGGGCGTTTTCAAGGTGTCCAACAGTTCGATGCAGAAATCAAAACTCTTGGAAGGCTGCGCCATCCGAACCTTGTCACCTTGATTGGTTACCATGCCAGTGAAACAGAGATGTTCTTGATATATAATTATTTGCCAGGTGGTAATTTGGAAAAATTCATCCAGGAGAGGTCCACAAGGGCAGTTGATTGGAGAATACTTCACAAGATTGCACTGGACATAGCCCGCGCGCTCGCATATCTTCACGATCAGTGTGTACCACGAGTCCTCCACCGTGATGTGAAACCAAGCAATATACTATTAGACGATGATTTCAATGCTTATCTCTCGGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACACATGCTACCACAGGTGTGGCTGGAACTTTCGGCTATGTTGCTCCCGAATATGCTATGACGTGCCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCGGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTATGGTAATGGTTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGCGCCAAGGAATTCTTCACAGCCGGGTTATGGGAGGTAGGCCCCCATGATGATCTGGTTGAAGTATTACACTTAGCAGTTGTGTGTACAGTTGACTCTCTCTCGACCAGGCCGACGATGAAGCAGGTTGTACGACGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3426 45.07 MGSSSSSFSVIKWFSSSSHTSPILLSKLFFLFCFLVFFQTQLISGNSDKSLLLHFKNAVSDPSGLLSSWTATGSEYCFWFGVSCDLNSRVVSLNISGNGGAGNSNGFFCSDSSKFPLYGLGIRRGCVGSRGSLIGKLPPVIGKLTQLRTLSLPFNGFQGEIPTEILGLENLEVLDLEGNSVTGVLPNDFERLGKLRVLNLGFNRLTGEIPSSLSGCASLETLNLAGNQLNGTIPQFVGRLKGVYLSFNLFTGSIPIELGNNCEKLEHLDLSGNFLVSGIPSNLGNCSQLQTLLLYSNMLEEAIPDEIGKLQKLEVLDLSRNSLSGPIPSELGNCLQLSVLVLSNLFNPIPKINYTDEDSPTEELSDDSFNYFAGGIPESVTTLPKLRILWAPSANLNGRFPSQWAKCESLEMINLAGNYLYGELPSGFSVCKKLQILDLSSNRLSGELDKNLPVPYMTLFDISGNHLVGTIPNECGNDCSPPTFHSKGYLDLDDASSRYLAFFASSIRSATPFEFLGDGDLIVHNFGENNFTGNLLSLPFPRERLGKKTIYAFLVGGNKLTGPFPDSIFEKCEDLGGLIFNISNNKISGPFSVTIGKKCGSLKFLDASGNQMTGQVPLSFGELRALNHLNLSWNKFQYQIPTSLGQMADLKYLCLAGNNFNGSIPSTLGKLQSLELLDLSYNFLSGEIPKELVNLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLRPCHMFSLAVPSSEMQGSVGDPSSLAASPSSVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATNNFNASNCIGSGGFGATYKAEIASGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13866247 13869672 - Maker00018585 Lcy3g0415 627607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0415 1141 SMART LRR_typ_2 168 191 IPR003591 -
Lcy3g0415 1141 SMART LRR_typ_2 192 216 IPR003591 -
Lcy3g0415 1141 SMART LRR_typ_2 262 286 IPR003591 -
Lcy3g0415 1141 SMART LRR_typ_2 217 240 IPR003591 -
Lcy3g0415 1141 SMART LRR_typ_2 671 695 IPR003591 -
Lcy3g0415 1141 SMART LRR_typ_2 623 647 IPR003591 -
Lcy3g0415 1141 SMART LRR_typ_2 310 334 IPR003591 -
Lcy3g0415 1141 SMART serkin_6 862 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0415 1141 Pfam Protein kinase domain 865 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0415 1141 SUPERFAMILY Protein kinase-like (PK-like) 847 1133 IPR011009 -
Lcy3g0415 1141 ProSitePatterns Protein kinases ATP-binding region signature. 868 890 IPR017441 GO:0005524(InterPro)
Lcy3g0415 1141 Gene3D Ribonuclease Inhibitor 361 480 IPR032675 -
Lcy3g0415 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 259 350 - -
Lcy3g0415 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 519 761 - -
Lcy3g0415 1141 Gene3D Ribonuclease Inhibitor 45 238 IPR032675 -
Lcy3g0415 1141 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 364 448 - -
Lcy3g0415 1141 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 Pfam Leucine Rich Repeat 673 695 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 Pfam Leucine Rich Repeat 601 623 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 Pfam Leucine Rich Repeat 650 671 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 Pfam Leucine Rich Repeat 698 718 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 Pfam Leucine Rich Repeat 626 647 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 Pfam Leucine Rich Repeat 433 452 IPR001611 GO:0005515(InterPro)
Lcy3g0415 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 938 1140 - -
Lcy3g0415 1141 CDD STKc_IRAK 868 1136 - -
Lcy3g0415 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 982 994 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0415 1141 PRINTS Leucine-rich repeat signature 671 684 - -
Lcy3g0415 1141 PRINTS Leucine-rich repeat signature 434 447 - -
Lcy3g0415 1141 Gene3D Ribonuclease Inhibitor 520 761 IPR032675 -
Lcy3g0415 1141 Gene3D Ribonuclease Inhibitor 239 353 IPR032675 -
Lcy3g0415 1141 Gene3D Phosphorylase Kinase; domain 1 824 937 - -
Lcy3g0415 1141 SUPERFAMILY L domain-like 240 741 - -
Lcy3g0415 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 826 937 - -
Lcy3g0415 1141 Gene3D Transferase(Phosphotransferase) domain 1 938 1138 - -
Lcy3g0415 1141 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 368 1136 IPR050647 -
Lcy3g0415 1141 ProSiteProfiles Protein kinase domain profile. 862 1136 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0415 1141 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Lcy3g0415 1141 SUPERFAMILY L domain-like 46 345 - -
Lcy3g0415 1141 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0415 Lcy-Chr3:13866247 Lcy7g0396 Lcy-Chr7:3370972 5.13E-65 dispersed
Lcy10g1044 Lcy-Chr10:32558569 Lcy3g0415 Lcy-Chr3:13866247 4.05E-126 transposed
Lcy1g2551 Lcy-Chr1:46483928 Lcy3g0415 Lcy-Chr3:13866247 3.11E-56 wgd
Lcy10g0192 Lcy-Chr10:2743993 Lcy3g0415 Lcy-Chr3:13866247 5.54E-56 wgd
Lcy11g0962 Lcy-Chr11:29202535 Lcy3g0415 Lcy-Chr3:13866247 1.59E-40 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy4g0776 Lcy-Chr4:9268109 6.33E-63 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy5g1147 Lcy-Chr5:24670694 8.35E-59 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy7g1441 Lcy-Chr7:24257963 2.50E-56 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy9g0711 Lcy-Chr9:24217776 1.66E-55 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy9g0626 Lcy-Chr9:20737737 1.13E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65771 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0415 - - - 0.0