Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0450 ATGGCCAAATCCTTCACCAATTTGCTTCTTTGGTTGGCTTTTGTGTCCATTTTTTCCCAAACCATGGCTACTAGGCTCGTTCCCATTGGTAACCAAAAGTTCGATACCACTTGGTACGATGCTCGTGCCACCTTCTACGGCGACATGAGAGGTGGCGAAACCATGGAGGGAGCTTGCGGGTACAGAAACCTATTCGAGCAAGGGTATGGTCTGGCGACAGCAGCGCTAAGCACAGCGCTGTTCAACGAGGGTGGAGCCTGCGGAGCCTGCTTCGAGATAATGTGCGTGAACGACAAAAGCCAATGGTGCATACCAAACGCAGGCACCATCAAAATAACGGCAACAAACTTCTGCCCACCAAACTACACAAAAACACAAGACATTTGGTGCAACCCACCGCAGCACCACTTCGACCTCTCCCTCTACATGTTCTCGAAAATCGCCCCTTACAGGGCGGGCGTGGTCTCCGTCCGCTACCGTAGGACAGTCTGCCACAAAATGGGCGGCATCAGGTTCGAGCTCAGCGGGAACCCCTACTGGCTGCTGGTGTTGCCCTACAACGTCGGTGGCGCTGGCGATGTTGTTGATATGAAAATTAGAGGGTCTGGGGGGCTTGGTTGGCTTCAGATGGCCAGGAACTGGGGCCAGCATTGGCAGGTTAGTAAGATGTTGGTGGGGCAGAGCTTGTCTTTTCAAGTCACTACTAGTGATGGGAAGATGGTTGTGTTTGATAATGTTGTGCCGAGCTCTTGGCAGTTTGGACAGGCCTTTGATGGCAAGTATAATTTTTAG 792 52.02 MAKSFTNLLLWLAFVSIFSQTMATRLVPIGNQKFDTTWYDARATFYGDMRGGETMEGACGYRNLFEQGYGLATAALSTALFNEGGACGACFEIMCVNDKSQWCIPNAGTIKITATNFCPPNYTKTQDIWCNPPQHHFDLSLYMFSKIAPYRAGVVSVRYRRTVCHKMGGIRFELSGNPYWLLVLPYNVGGAGDVVDMKIRGSGGLGWLQMARNWGQHWQVSKMLVGQSLSFQVTTSDGKMVVFDNVVPSSWQFGQAFDGKYNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15686323 15688378 - Maker00018301 Lcy3g0450 627642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0450 263 Gene3D - 169 263 IPR036749 -
Lcy3g0450 263 Gene3D - 28 165 IPR036908 -
Lcy3g0450 263 SUPERFAMILY PHL pollen allergen 168 258 IPR036749 -
Lcy3g0450 263 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Lcy3g0450 263 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Lcy3g0450 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Lcy3g0450 263 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Lcy3g0450 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Lcy3g0450 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Lcy3g0450 263 PANTHER EXPANSIN-A15 9 260 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 SMART dpbb_1 73 159 IPR007112 -
Lcy3g0450 263 SUPERFAMILY Barwin-like endoglucanases 12 187 IPR036908 -
Lcy3g0450 263 CDD DPBB_EXPA_N 38 164 - -
Lcy3g0450 263 Pfam Expansin C-terminal domain 170 248 IPR007117 -
Lcy3g0450 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 96 107 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Lcy3g0450 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Lcy3g0450 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Lcy3g0450 263 Pfam Lytic transglycolase 73 159 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0450 Lcy-Chr3:15686323 Lcy8g1801 Lcy-Chr8:44424220 5.67E-91 dispersed
Lcy3g0450 Lcy-Chr3:15686323 Lcy3g0452 Lcy-Chr3:15751562 2.99E-158 proximal
Lcy3g0450 Lcy-Chr3:15686323 Lcy4g1224 Lcy-Chr4:27626994 4.50E-83 wgd
Lcy3g0450 Lcy-Chr3:15686323 Lcy7g1071 Lcy-Chr7:11465885 2.59E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0450 - - - 0.0