Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0452 ATGGCTAATTGGTACAACAATTTGCTTCTTTTGTTGCCTTTTCTGGCCATTTTTTCCCAAGCCATGCCTTCTAGGCTAGCTCCAATTATTGATCACAGAGTCGACATGACCTGGTATGATGCTCGTGCCACCTTCTACGGTGACATGAGTGGTGGTGAAACTATGCAGGGAGCATGCGGGTATGGAAACCTATTCGAGCAAGGATACGGTCTAGCGACCGCAGCGTTGAGCACAGCGTTGTTTAACGACGGTGGAGCATGCGGAGCATGCTTCGAGATAAAGTGCATGAACAACACAGAACACCAATGGTGCATACCAAATGCAGGCACAATCATAATAACAGCAACAAACTTCTGCCCACCAAACTACACAAAAACACAAGACATTTGGTGCAACCCACCACAGCGTCACTTCGACCTCTCCCTCTACATGTTCACCAAAATGGCCCCTTACAGAGCAGGCGTCATCCCGGTCCGCTACCGTAGGGCATTGTGCCACAAACAAGGCGGCCTCCGGTTCGAGCTCAAAGGGAACCCTTACTGGTTGCTAGTTTTGTTGTTCAATGTTGGTGGTGCTGGTGATGTTGTTGATGTCAAGATTAGAGGCTCTGATAGAACTGGCTGGCTTCAAATGTCAAGGAATTGGGGCCAAAATTGGCTGGTCAGTACGTTGTTGGTGGGGCAAAGCTTGTCTTTTCAAGTGACTACTAGTGATCGGAGGACGATTGTGTTTGATGATGTTGTGCCGAGCTATTGGCAGTTTGGGCAGACTTTTGAAGGTAAGTATAATTTCTAG 795 47.92 MANWYNNLLLLLPFLAIFSQAMPSRLAPIIDHRVDMTWYDARATFYGDMSGGETMQGACGYGNLFEQGYGLATAALSTALFNDGGACGACFEIKCMNNTEHQWCIPNAGTIIITATNFCPPNYTKTQDIWCNPPQRHFDLSLYMFTKMAPYRAGVIPVRYRRALCHKQGGLRFELKGNPYWLLVLLFNVGGAGDVVDVKIRGSDRTGWLQMSRNWGQNWLVSTLLVGQSLSFQVTTSDRRTIVFDDVVPSYWQFGQTFEGKYNF 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15751562 15753973 - Maker00018574 Lcy3g0452 627644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0452 264 Gene3D - 170 264 IPR036749 -
Lcy3g0452 264 Gene3D - 28 166 IPR036908 -
Lcy3g0452 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 170 IPR007112 -
Lcy3g0452 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Lcy3g0452 264 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
Lcy3g0452 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Lcy3g0452 264 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Lcy3g0452 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Lcy3g0452 264 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Lcy3g0452 264 CDD DPBB_EXPA_N 38 165 - -
Lcy3g0452 264 SUPERFAMILY Barwin-like endoglucanases 37 188 IPR036908 -
Lcy3g0452 264 SUPERFAMILY PHL pollen allergen 167 260 IPR036749 -
Lcy3g0452 264 Pfam Lytic transglycolase 73 160 IPR009009 -
Lcy3g0452 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Lcy3g0452 264 PANTHER EXPANSIN-A15 21 261 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Lcy3g0452 264 PRINTS Expansin signature 128 145 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 111 121 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 181 202 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 97 108 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 169 181 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 145 158 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Lcy3g0452 264 SMART dpbb_1 73 160 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0452 Lcy-Chr3:15751562 Lcy8g1801 Lcy-Chr8:44424220 7.59E-99 dispersed
Lcy3g0450 Lcy-Chr3:15686323 Lcy3g0452 Lcy-Chr3:15751562 2.99E-158 proximal
Lcy3g0452 Lcy-Chr3:15751562 Lcy3g0801 Lcy-Chr3:28994657 1.72E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0452 - - - 0.0