Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy3g0553 | ATGGCTTCAAATTTGGGAGGGGCGTCGATGTCGCAAACAGATGATTTCGAGACGTTGCCTCAAATGACTGATATCGAGCCTCTAAAGAGGGCCTGGCGTAATGAAAAGGCTGCTCCTGAGATTCTACCCTTTGAGGCATCTCTAGTTGAGAGAATCAAAGGGCAGATTCAATTAATGGAAGATGCTATAGAGGAAGATTCAAGAAGTGGTATTGATCCGCTAATTGTATCACTCTATCAAATGGATTTAGATAGGACACAGTTCTTATTGAGATCATATATTAGGATTCGCTTGCAGAAGATTGAGAAGTACATGTTCTATATCTTGAAGTCAGATGAACTTTCCAGGCGTCTTTCTGAAGAAGAGAGAAGATTTACTGATAGGTGTTGTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAATTAATTATCAGGACTTTTTGAGGCAATCTGTAATAAGTGAAGAGGATGACATGGTTCCAGAACCCCCACTGGATACATTTGTGGTCTGCAAAAGTAAGGAATATCTGGAACATATACAGCTTGAGGATGAGGAAGAGAGGGCATCTAGTAGAATAGAGGAACCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAAGCCCATAAAATCCCTTGTGGAGAGCGGGAGAATCGATTTGCTGTAG | 690 | 40.43 | MASNLGGASMSQTDDFETLPQMTDIEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRIRLQKIEKYMFYILKSDELSRRLSEEERRFTDRCCHDMKKHFDESVLSKLPINYQDFLRQSVISEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYKPIKSLVESGRIDLL | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 20775230 | 20779406 | - | Maker00018831 | Lcy3g0553 | 627745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy3g0553 | 229 | CDD | GINS_B_Sld5 | 168 | 229 | IPR031633 | - | |
Lcy3g0553 | 229 | Gene3D | - | 11 | 219 | - | - | |
Lcy3g0553 | 229 | Pfam | DNA replication complex GINS protein SLD5 C-terminus | 168 | 229 | IPR031633 | - | |
Lcy3g0553 | 229 | SUPERFAMILY | GINS helical bundle-like | 22 | 154 | IPR036224 | - | |
Lcy3g0553 | 229 | CDD | GINS_A_Sld5 | 24 | 142 | IPR038749 | - | |
Lcy3g0553 | 229 | PANTHER | SLD5 PROTEIN | 12 | 229 | IPR008591 | GO:0000727(PANTHER)|GO:0000811(PANTHER)|GO:0006261(InterPro) | |
Lcy3g0553 | 229 | FunFam | DNA replication complex GINS protein SLD5 | 9 | 219 | - | - | |
Lcy3g0553 | 229 | SUPERFAMILY | PriA/YqbF domain | 170 | 229 | - | - | |
Lcy3g0553 | 229 | PIRSF | GINS_Sld5 | 1 | 229 | IPR008591 | GO:0006261(InterPro) | |
Lcy3g0553 | 229 | Pfam | GINS complex protein helical bundle domain | 61 | 138 | IPR021151 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1982 | Lcy-Chr11:43418246 | Lcy3g0553 | Lcy-Chr3:20775230 | 2.52E-158 | dispersed | |
Lcy3g0553 | Lcy-Chr3:20775230 | Lcy13g1039 | Lcy-Chr13:22711472 | 1.74E-143 | dispersed | |
Lcy3g0553 | Lcy-Chr3:20775230 | Lcy3g0554 | Lcy-Chr3:20804357 | 1.85E-160 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy3g0553 | K10735 | - | csv:101210888 | 382.874 |