Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0553 ATGGCTTCAAATTTGGGAGGGGCGTCGATGTCGCAAACAGATGATTTCGAGACGTTGCCTCAAATGACTGATATCGAGCCTCTAAAGAGGGCCTGGCGTAATGAAAAGGCTGCTCCTGAGATTCTACCCTTTGAGGCATCTCTAGTTGAGAGAATCAAAGGGCAGATTCAATTAATGGAAGATGCTATAGAGGAAGATTCAAGAAGTGGTATTGATCCGCTAATTGTATCACTCTATCAAATGGATTTAGATAGGACACAGTTCTTATTGAGATCATATATTAGGATTCGCTTGCAGAAGATTGAGAAGTACATGTTCTATATCTTGAAGTCAGATGAACTTTCCAGGCGTCTTTCTGAAGAAGAGAGAAGATTTACTGATAGGTGTTGTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAATTAATTATCAGGACTTTTTGAGGCAATCTGTAATAAGTGAAGAGGATGACATGGTTCCAGAACCCCCACTGGATACATTTGTGGTCTGCAAAAGTAAGGAATATCTGGAACATATACAGCTTGAGGATGAGGAAGAGAGGGCATCTAGTAGAATAGAGGAACCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAAGCCCATAAAATCCCTTGTGGAGAGCGGGAGAATCGATTTGCTGTAG 690 40.43 MASNLGGASMSQTDDFETLPQMTDIEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRIRLQKIEKYMFYILKSDELSRRLSEEERRFTDRCCHDMKKHFDESVLSKLPINYQDFLRQSVISEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20775230 20779406 - Maker00018831 Lcy3g0553 627745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0553 229 CDD GINS_B_Sld5 168 229 IPR031633 -
Lcy3g0553 229 Gene3D - 11 219 - -
Lcy3g0553 229 Pfam DNA replication complex GINS protein SLD5 C-terminus 168 229 IPR031633 -
Lcy3g0553 229 SUPERFAMILY GINS helical bundle-like 22 154 IPR036224 -
Lcy3g0553 229 CDD GINS_A_Sld5 24 142 IPR038749 -
Lcy3g0553 229 PANTHER SLD5 PROTEIN 12 229 IPR008591 GO:0000727(PANTHER)|GO:0000811(PANTHER)|GO:0006261(InterPro)
Lcy3g0553 229 FunFam DNA replication complex GINS protein SLD5 9 219 - -
Lcy3g0553 229 SUPERFAMILY PriA/YqbF domain 170 229 - -
Lcy3g0553 229 PIRSF GINS_Sld5 1 229 IPR008591 GO:0006261(InterPro)
Lcy3g0553 229 Pfam GINS complex protein helical bundle domain 61 138 IPR021151 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1982 Lcy-Chr11:43418246 Lcy3g0553 Lcy-Chr3:20775230 2.52E-158 dispersed
Lcy3g0553 Lcy-Chr3:20775230 Lcy13g1039 Lcy-Chr13:22711472 1.74E-143 dispersed
Lcy3g0553 Lcy-Chr3:20775230 Lcy3g0554 Lcy-Chr3:20804357 1.85E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0553 K10735 - csv:101210888 382.874