Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0554 ATGGCTTCAAATTTGGGAGGGGCGTCGATGTCGCAAACAGATGATTTCGAGACGTTGCCTCAAATGACTGATATCGAGCCTCTAAAGAGGGCCTGGCGTAATGAAAAGGCTGCTCCTGAGATTCTACCCTTTGAGGCATCTCTAGTTGAGAGAATCAAAGGGCAGATTCAATTAATGGAAGATGCTATAGAGGAAGATTCAAGAAGTGGTATTGATCCGCTAATTGTATCACTCTATCAAATGGATTTAGATAGGACACAGTTCTTATTGAGATCATATATTAGGATTCGCTTGCAGAAGATTGAGAAGTACATGTTCTATATCTTGAAGTCAGATGAACTTTCCAGGCGTCTTTCTGAAGAAGAGAGAAGATTTACTGATAGGTGTTGTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAATTAATTATCAGGACTTTTTGAGGCAATCTGTAATAAGTGAAGAGGATGACATGGTTCCAGAACCCCCACTGGATACATTTGTGGTCTGCAAAAGTAAGGAATATCTGGAACATATACAGCTTGAGGATGAGGAAGAGAGGGCATCTAGTAGAATAGAGGAACCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAAGCCCATAAAATCCCTTGTGGAGAGCGGGAGAATCGATTTGCTGTAG 690 40.43 MASNLGGASMSQTDDFETLPQMTDIEPLKRAWRNEKAAPEILPFEASLVERIKGQIQLMEDAIEEDSRSGIDPLIVSLYQMDLDRTQFLLRSYIRIRLQKIEKYMFYILKSDELSRRLSEEERRFTDRCCHDMKKHFDESVLSKLPINYQDFLRQSVISEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20804357 20808533 - Maker00018844 Lcy3g0554 627746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0554 229 CDD GINS_B_Sld5 168 229 IPR031633 -
Lcy3g0554 229 Gene3D - 11 219 - -
Lcy3g0554 229 Pfam DNA replication complex GINS protein SLD5 C-terminus 168 229 IPR031633 -
Lcy3g0554 229 SUPERFAMILY GINS helical bundle-like 22 154 IPR036224 -
Lcy3g0554 229 CDD GINS_A_Sld5 24 142 IPR038749 -
Lcy3g0554 229 PANTHER SLD5 PROTEIN 12 229 IPR008591 GO:0000727(PANTHER)|GO:0000811(PANTHER)|GO:0006261(InterPro)
Lcy3g0554 229 FunFam DNA replication complex GINS protein SLD5 9 219 - -
Lcy3g0554 229 SUPERFAMILY PriA/YqbF domain 170 229 - -
Lcy3g0554 229 PIRSF GINS_Sld5 1 229 IPR008591 GO:0006261(InterPro)
Lcy3g0554 229 Pfam GINS complex protein helical bundle domain 61 138 IPR021151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0554 K10735 - - csv:101210888 382.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0554 Lcy-Chr3:20804357 Lcy13g1039 Lcy-Chr13:22711472 1.74E-143 dispersed
Lcy3g0553 Lcy-Chr3:20775230 Lcy3g0554 Lcy-Chr3:20804357 1.85E-160 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1462 . 102 791 Core DNA Replication Machinery Family AT4G14700 66.2 1.6e-265 912.9
Lcy13g0853 . 521 1078 Core DNA Replication Machinery Family AT4G14700 65.9 5.9e-215 745.0
Lcy11g0308 . 52 573 Core DNA Replication Machinery Family AT4G14700 64.1 3.5e-191 666.0
Lcy11g0309 . 102 270 Core DNA Replication Machinery Family AT4G14700 69.7 2.7e-66 251.1
Lcy6g1462 . 102 791 Core DNA Replication Machinery Family AT4G12620 67.8 2.0e-271 932.6
Lcy13g0853 . 521 1067 Core DNA Replication Machinery Family AT4G12620 68.3 2.3e-219 759.6
Lcy11g0308 . 52 573 Core DNA Replication Machinery Family AT4G12620 65.8 1.5e-194 677.2
Lcy11g0309 . 102 270 Core DNA Replication Machinery Family AT4G12620 71.7 4.4e-69 260.4
Lcy13g2044 . 49 410 Core DNA Replication Machinery Family AT2G37560 66.0 1.6e-140 496.5
Lcy12g1380 . 15 441 Core DNA Replication Machinery Family AT5G16690 53.1 5.7e-121 432.6
Lcy7g1035 . 9 425 Core DNA Replication Machinery Family AT2G01120 57.0 3.9e-133 472.2
Lcy13g0701 . 307 834 Core DNA Replication Machinery Family AT4G29910 55.8 6.0e-166 581.6
Lcy7g1942 . 39 318 Core DNA Replication Machinery Family AT1G26840 64.4 2.6e-93 339.3
Lcy8g0029 . 1 226 Core DNA Replication Machinery Family AT1G26840 66.2 1.7e-79 293.5
Lcy4g0064 . 1 808 Core DNA Replication Machinery Family AT1G79150 59.5 1.7e-249 859.8
Lcy11g0915 . 10 962 Core DNA Replication Machinery Family AT1G44900 73.5 0.0e+00 1336.6
Lcy1g0195 . 1 599 Core DNA Replication Machinery Family AT5G46280 78.4 5.2e-266 914.1
Lcy1g0019 . 6 222 Core DNA Replication Machinery Family AT5G46280 52.5 3.4e-60 230.3
Lcy3g0984 . 1 846 Core DNA Replication Machinery Family AT2G16440 73.4 0.0e+00 1182.9
Lcy4g2051 . 1 736 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.4
Lcy1g0019 . 3 297 Core DNA Replication Machinery Family AT2G07690 50.2 1.7e-72 271.6
Lcy7g1690 . 15 183 Core DNA Replication Machinery Family AT2G07690 62.7 1.0e-61 235.7
Lcy5g1003 . 15 171 Core DNA Replication Machinery Family AT2G07690 64.3 1.4e-61 235.3
Lcy1g0019 . 1 490 Core DNA Replication Machinery Family AT5G44635 70.1 1.3e-191 667.5
Lcy1g0020 . 1 305 Core DNA Replication Machinery Family AT5G44635 78.4 5.2e-137 486.1
Lcy3g1810 . 11 741 Core DNA Replication Machinery Family AT4G02060 83.6 0.0e+00 1210.3
Lcy8g1760 . 63 463 Core DNA Replication Machinery Family AT2G29680 62.3 6.5e-143 505.0
Lcy13g0711 . 63 325 Core DNA Replication Machinery Family AT2G29680 66.5 3.6e-101 366.3
Lcy8g1760 . 68 433 Core DNA Replication Machinery Family AT1G07270 64.8 1.8e-134 476.9
Lcy13g0711 . 37 326 Core DNA Replication Machinery Family AT1G07270 63.4 4.4e-101 365.9
Lcy3g1361 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 1.3e-259 892.9
Lcy5g0260 . 12 792 Core DNA Replication Machinery Family AT3G09660 74.1 0.0e+00 1121.7
Lcy4g0233 . 10 357 Core DNA Replication Machinery Family AT2G14050 71.1 3.0e-145 513.1
Lcy4g0231 . 5 222 Core DNA Replication Machinery Family AT2G14050 75.1 1.3e-95 348.2
Lcy8g1254 . 1 445 Core DNA Replication Machinery Family AT2G20980 52.3 4.5e-115 412.1
Lcy9g1541 . 1 958 Core DNA Replication Machinery Family AT1G77320 50.2 1.4e-258 890.2
Lcy3g2057 . 1 235 Core DNA Replication Machinery Family AT1G80190 59.7 1.7e-70 263.1
Lcy2g2423 . 148 333 Core DNA Replication Machinery Family AT3G12530 57.5 3.3e-55 211.8
Lcy10g2194 . 1 186 Core DNA Replication Machinery Family AT1G19080 68.3 1.7e-69 259.6
Lcy10g2194 . 1 186 Core DNA Replication Machinery Family AT3G55490 68.3 1.7e-69 259.6
Lcy3g0553 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy3g0554 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy13g1039 . 231132 231295 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy11g1982 . 1 164 Core DNA Replication Machinery Family AT5G49010 61.4 1.2e-49 193.7
Lcy8g0834 . 1 1558 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1764.6
Lcy7g0076 . 38 680 Core DNA Replication Machinery Family AT1G67630 56.7 1.8e-200 696.4
Lcy3g1510 . 1 519 Core DNA Replication Machinery Family AT1G67320 62.4 3.1e-182 635.6
Lcy9g0019 . 68 497 Core DNA Replication Machinery Family AT1G67320 65.2 1.8e-166 583.2
Lcy2g2216 . 472 791 Core DNA Replication Machinery Family AT5G41880 63.9 2.8e-121 433.0
Lcy9g0348 . 30 357 Core DNA Replication Machinery Family AT5G41880 62.3 3.4e-119 426.0
Lcy1g1200 . 1 687 Core DNA Replication Machinery Family AT5G63960 74.3 4.5e-306 1048.1
Lcy5g0600 . 1 421 Core DNA Replication Machinery Family AT2G42120 76.7 7.2e-199 690.6
Lcy3g1510 . 1 519 Core DNA Replication Machinery Family AT1G67320 62.4 3.1e-182 635.6
Lcy9g0019 . 68 497 Core DNA Replication Machinery Family AT1G67320 65.2 1.8e-166 583.2
Lcy8g1984 . 55 2378 Core DNA Replication Machinery Family AT1G08260 64.0 0.0e+00 2844.7
Lcy5g2343 . 5 2065 Core DNA Replication Machinery Family AT1G08260 64.7 0.0e+00 2698.3
Lcy8g1984 . 63 2485 Core DNA Replication Machinery Family AT2G27120 60.9 0.0e+00 2817.0
Lcy5g2343 . 28 2184 Core DNA Replication Machinery Family AT2G27120 62.1 0.0e+00 2676.4
Lcy2g2119 . 7 518 Core DNA Replication Machinery Family AT5G22110 50.4 8.2e-143 504.6
Lcy3g0749 . 1 278 Core DNA Replication Machinery Family AT5G22110 69.4 1.8e-105 380.6
Lcy8g2029 . 290 1066 Core DNA Replication Machinery Family AT5G22010 69.9 2.0e-299 1025.8
Lcy6g1987 . 1 368 Core DNA Replication Machinery Family AT1G63160 82.4 7.2e-167 583.9
Lcy1g1725 . 1 345 Core DNA Replication Machinery Family AT5G27740 78.3 8.8e-155 543.9
Lcy9g1544 . 41 361 Core DNA Replication Machinery Family AT1G21690 75.7 1.1e-138 490.3
Lcy10g1238 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.6 1.6e-154 543.1
Lcy4g2255 . 26 680 Core DNA Replication Machinery Family AT2G06510 62.4 1.2e-244 843.2
Lcy6g2277 . 81 747 Core DNA Replication Machinery Family AT2G06510 52.5 2.4e-200 696.0
Lcy2g0510 . 1 638 Core DNA Replication Machinery Family AT5G08020 66.7 7.5e-247 850.5
Lcy6g2277 . 57 856 Core DNA Replication Machinery Family AT5G45400 52.7 2.1e-234 809.7
Lcy4g2255 . 210 682 Core DNA Replication Machinery Family AT5G45400 59.4 3.0e-169 593.2
Lcy2g0510 . 1 633 Core DNA Replication Machinery Family AT5G61000 65.8 1.4e-243 839.7
Lcy6g2277 . 57 842 Core DNA Replication Machinery Family AT4G19130 56.0 1.6e-233 806.6
Lcy2g2397 . 5 113 Core DNA Replication Machinery Family AT5G26680 76.0 9.3e-47 185.3
Lcy11g1151 . 1 298 Core DNA Replication Machinery Family AT2G25100 66.8 2.6e-114 409.1
Lcy8g1937 . 1 776 Core DNA Replication Machinery Family AT1G08130 63.6 2.5e-279 958.7
Lcy8g1937 . 197 776 Core DNA Replication Machinery Family AT1G49250 66.3 1.3e-228 790.0