Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0776 ATGGCTTCATTCCATGCAGAAGCTTCTGAGTCTGGCAGTGTTGATTATGTTCAACGAGCTCAGTGGCTCCGAGCAGCGGTTCTCGGGGCCAACGATGGGCTCGTCTCCGTTGCGTCGCTGATGATGGGCGTCGGAGCTGTGAAGCCCGACGCCAAAGCCATGCTTATTGCTGGATTTGCAGGGATGGTTGCTGGGGCTTGCAGCATGGCCATCGGAGAGTTCGTCTCCGTTTACACACAATATGACATACAGAAAGCTCAGCTCAAGAGGAATGGAAAGCAAAAGAATAGTGGCATGCAACTGAACCACCCGGCAGCTGACGCAGCAGAGGAAGAGAAGCTGCCAAACCCATTGCAGGCTGCGATCGCTTCCGCGATTGCATTTTCGGTCGGAGCAGTCATTCCTTTGCTGGCAGCGGTGTTTATCCGAGACCATAAGGTGAGGCTCGGTGTCGTAGCGGCGGTGGCGAGCTTGACGCTGGTGGTTTTTGGAGGAGTTGGAGCCGTCTTGGGGAGGACTCCGGTGGGAAAATCGGCGGCGAGAGTGCTTGTCGGAGGGTGGATGGCTATGGCCATCACCTTTGGTCTTACAAAGCTGCTCGGATCCAAGGGACTGTGA 618 55.83 MASFHAEASESGSVDYVQRAQWLRAAVLGANDGLVSVASLMMGVGAVKPDAKAMLIAGFAGMVAGACSMAIGEFVSVYTQYDIQKAQLKRNGKQKNSGMQLNHPAADAAEEEKLPNPLQAAIASAIAFSVGAVIPLLAAVFIRDHKVRLGVVAAVASLTLVVFGGVGAVLGRTPVGKSAARVLVGGWMAMAITFGLTKLLGSKGL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28131881 28133454 - Maker00035043 Lcy3g0776 627968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0776 205 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 8 201 IPR008217 GO:0005381(PANTHER)|GO:0005384(PANTHER)|GO:0005384(InterPro)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(PANTHER)|GO:0030026(InterPro)
Lcy3g0776 205 Pfam VIT family 110 197 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Lcy3g0776 205 Pfam VIT family 23 94 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1348 Lcy-Chr10:36642003 Lcy3g0776 Lcy-Chr3:28131881 7.10E-66 dispersed
Lcy3g0776 Lcy-Chr3:28131881 Lcy9g0967 Lcy-Chr9:32416619 2.45E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0776 K22736 - csv:101214875 312.768