Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0798 ATGCCTTTCTTCCTCCCTCTCCTCTTCCTCTCTCTCATCTCTTCCGCCGCAGCTTGTGATCGTTGTGTTCATCAGGCCAAAGCCGCCTTCTACCAGGATGAGGCCGCCGGTTCATACAGAGGCGCCTGTGGCTATGGCGATCTGACATTGGAGCTCTCAAATGGCTACTTCTCCGCCATCATGCCTCCTCTTTACAAGTACGGCGCTGGCTGTGGTGCCTGTTTTCAAGTGAGGTGCAAGAATGAGAAGATTTGTAGCAGAGAAGGGACCAAAATTGTTGTGACAGATCGAAATGACAACACTTATACGGGATTGGTTCTAAGCCAGAAGGGTTTTGCTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTTCTGAGCTATGGGGTTGTGGACGTGGAATTCAAAAGGATTCCTTGTGAGTACAAGAATAGGAACTTGTTGGTTAGAGTGGAAGAGTGGAGTCAATATCCCACTTATTTAGCCATTAAATTGCTTTACCAAGGTGGCCAAACGGAAATAGTAGCGGTCGATATAGCTCAGGTGGGTTATTCGAATTGGGATTATATGGGTAGGAACTATGGAGCTGTGTGGGAGACTAAAAAGCCACTACCGAAAGGACCATTGCAGTTGAGGTTCGTGGTGACTTCTGGATATGATGGCAAGTGGATTTGGGCAAAATATGTACTCCCTGCTGATTGGAGACCTGGATTGATCTACGACACGGGAGTTCAAATCGACGACATTGCCAAAGAAGGGTGTCCAGCAGAACAATGTGGCGATGGACAGTGGAGAAAACGATAA 801 47.44 MPFFLPLLFLSLISSAAACDRCVHQAKAAFYQDEAAGSYRGACGYGDLTLELSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSREGTKIVVTDRNDNTYTGLVLSQKGFAEMAVSGKDGLLLSYGVVDVEFKRIPCEYKNRNLLVRVEEWSQYPTYLAIKLLYQGGQTEIVAVDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQIDDIAKEGCPAEQCGDGQWRKR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28901480 28903259 - Maker00014637 Lcy3g0798 627990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0798 266 Gene3D - 11 140 IPR036908 -
Lcy3g0798 266 PANTHER EXPANSIN-B3 9 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0798 266 Gene3D - 141 245 IPR036749 -
Lcy3g0798 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lcy3g0798 266 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lcy3g0798 266 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy3g0798 266 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lcy3g0798 266 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lcy3g0798 266 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Lcy3g0798 266 Pfam Lytic transglycolase 59 133 IPR009009 -
Lcy3g0798 266 Pfam Expansin C-terminal domain 149 230 IPR007117 -
Lcy3g0798 266 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Lcy3g0798 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Lcy3g0798 266 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0798 Lcy-Chr3:28901480 Lcy3g0804 Lcy-Chr3:29059405 1.98E-129 dispersed
Lcy3g0798 Lcy-Chr3:28901480 Lcy3g0800 Lcy-Chr3:28963024 1.98E-115 proximal
Lcy12g1876 Lcy-Chr12:39908175 Lcy3g0798 Lcy-Chr3:28901480 4.36E-58 transposed
Lcy1g2325 Lcy-Chr1:36285431 Lcy3g0798 Lcy-Chr3:28901480 1.13E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0798 - - - 0.0