Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0800 ATGTGGGTTTTTTATCCATTTGAAACAGATGGGGGAGCATGTGGTTATGGTAACATAGCACTGCAGTTTTCCAATGGCTTCTTTGCAGCTGCTGTACCTTCCCTTTATAGACAAGGAGCTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAATAGAAGGCTTTGTACCACAGCAGGGACTAAAGTGGTGTTGACGGATCAAAATAATGATAATGTGACAGATCTTGTTCTTAGTAAAAGAGCTTTCTATACAATGGCTCTAAAGGGCAAAGGTTCAGACCTGTTGAATCTTGGAGTTGTCGATGTTGAATACAAGAGGGTGCCTTGTGAATACAAAAATAAAAATTTGTTGGTGCAAGTGGAAGAATCAAGTTACAATCCATTCTACTTGGCTATTAAATTTTTGTACCAAGGTGGCCAAACAGATATAGTAGCCGTCGACATAGCTCAAGTTGGCACATCCGATTGGAGCCATATGAAGAGAAATTATGGTGCTATTTGGGAAACTAACAACATACCTGAAGGAGCACTACAGTTGAGGATGGTAGTAACATCAGGATATGATGGGAAGTGGGTTTGGGCAAAATCTGTACTTCCTGCTGATTGGAAAAGTGGAGCAATTTATGACACTGGAGTTCAAATGAATGATATTTCTAAAGAGAGTTGTCCTCCATGGCAATGTGGTGATAAGCCATGGAAATGA 705 40.57 MWVFYPFETDGGACGYGNIALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCTTAGTKVVLTDQNNDNVTDLVLSKRAFYTMALKGKGSDLLNLGVVDVEYKRVPCEYKNKNLLVQVEESSYNPFYLAIKFLYQGGQTDIVAVDIAQVGTSDWSHMKRNYGAIWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKSGAIYDTGVQMNDISKESCPPWQCGDKPWK 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28963024 28964068 - Maker00013924 Lcy3g0800 627992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0800 234 PRINTS Expansin/Lol pI family signature 98 114 IPR007118 GO:0005576(InterPro)
Lcy3g0800 234 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Lcy3g0800 234 PRINTS Expansin/Lol pI family signature 32 50 IPR007118 GO:0005576(InterPro)
Lcy3g0800 234 PRINTS Expansin/Lol pI family signature 157 171 IPR007118 GO:0005576(InterPro)
Lcy3g0800 234 PRINTS Expansin/Lol pI family signature 10 28 IPR007118 GO:0005576(InterPro)
Lcy3g0800 234 SUPERFAMILY Barwin-like endoglucanases 8 114 IPR036908 -
Lcy3g0800 234 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 129 211 IPR007117 -
Lcy3g0800 234 Pfam Lytic transglycolase 30 105 IPR009009 -
Lcy3g0800 234 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0800 234 PRINTS Major pollen allergen Lol pI signature 87 102 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0800 234 PRINTS Major pollen allergen Lol pI signature 187 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0800 234 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0800 234 SUPERFAMILY PHL pollen allergen 115 210 IPR036749 -
Lcy3g0800 234 Gene3D - 112 216 IPR036749 -
Lcy3g0800 234 Pfam Expansin C-terminal domain 119 200 IPR007117 -
Lcy3g0800 234 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 11 115 IPR007112 -
Lcy3g0800 234 PANTHER EXPANSIN-B3 10 217 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0800 234 Gene3D - 4 111 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0800 Lcy-Chr3:28963024 Lcy3g0804 Lcy-Chr3:29059405 7.95E-156 dispersed
Lcy3g0798 Lcy-Chr3:28901480 Lcy3g0800 Lcy-Chr3:28963024 1.98E-115 proximal
Lcy3g0800 Lcy-Chr3:28963024 Lcy3g0801 Lcy-Chr3:28994657 3.81E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0800 - - - 0.0