Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0801 ATGGCTTGGTTTTTGGGCTTTCTCCTCCTTTTCTTGGTCTCTTCGGCCAATGCTTGTGATCGTTGTATTTTTCAATCGAAGGCTGCTCATTATTACGGAGATGCGCCTACTACATATGGAGGTGCATGTGGGTATGGAAATATGGCCTTGGAATTATCCCAAGGTTATTTTGCAGCAGCGGTGCCTTCTATCTATCGCAAAGGAATGGGTTGTGGTGCCTGCTATCAAATACGATGCAAGAATGAAACATTGTGTAACACGGTAGGGACCAAAGTAGTTTTAACGGATGAAAATACAGATAATAGAACAGATTTTGTTATCAGTAAAAAAGCCTTTTCTGCTATGGCTTTAAAGGGCAAAGGCCAAGAACTGTTGAAAACTGGAATCGTTGATGTGGAGTACAAGAGGATACCTTGTGAATACAATAAAAATTTATTAGTACAAGTGGTAGAATGGAGCCACAAACCATATTACTTGGCTATTAAATTTCTCTACCAAGGAGGCCAAACCGACATAACAGCTGTCTACATAGCAGCTCAGGATGGTTCGGGTGACGGGCACTACATGAAAAGAAATTATGGACCTATTTGGGATACCAATAATGTGCCTGAAGGAGCAATTAAGCTTGTGGCAATTGTAGTTTCGGGATATAATAATGGGAGGGGGATTGTGATAAATTATGCACTCCCTGTTGATTGGAAGAATGGAGAGATTTATGATACTGGAATTCAAATTAAGGATATTGCTTCTGAATATTGTAATCCTTGGCGATGCGGTGAGCAACCATGGAAATGA 795 40.5 MAWFLGFLLLFLVSSANACDRCIFQSKAAHYYGDAPTTYGGACGYGNMALELSQGYFAAAVPSIYRKGMGCGACYQIRCKNETLCNTVGTKVVLTDENTDNRTDFVISKKAFSAMALKGKGQELLKTGIVDVEYKRIPCEYNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDITAVYIAAQDGSGDGHYMKRNYGPIWDTNNVPEGAIKLVAIVVSGYNNGRGIVINYALPVDWKNGEIYDTGIQIKDIASEYCNPWRCGEQPWK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28994657 28996394 - Maker00014734 Lcy3g0801 627993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0801 264 SUPERFAMILY Barwin-like endoglucanases 9 143 IPR036908 -
Lcy3g0801 264 Pfam Lytic transglycolase 59 134 IPR009009 -
Lcy3g0801 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lcy3g0801 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Lcy3g0801 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lcy3g0801 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lcy3g0801 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy3g0801 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 241 IPR007117 -
Lcy3g0801 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lcy3g0801 264 Gene3D - 13 140 IPR036908 -
Lcy3g0801 264 SUPERFAMILY PHL pollen allergen 150 240 IPR036749 -
Lcy3g0801 264 Pfam Expansin C-terminal domain 154 209 IPR007117 -
Lcy3g0801 264 CDD DPBB_EXLA_N 14 141 - -
Lcy3g0801 264 Gene3D - 141 246 IPR036749 -
Lcy3g0801 264 PANTHER EXPANSIN-B3 8 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1084 Lcy-Chr11:32677427 Lcy3g0801 Lcy-Chr3:28994657 3.18E-72 dispersed
Lcy2g1323 Lcy-Chr2:14624867 Lcy3g0801 Lcy-Chr3:28994657 1.26E-136 dispersed
Lcy3g0801 Lcy-Chr3:28994657 Lcy3g0803 Lcy-Chr3:29055596 5.99E-170 dispersed
Lcy3g0800 Lcy-Chr3:28963024 Lcy3g0801 Lcy-Chr3:28994657 3.81E-114 tandem
Lcy3g0452 Lcy-Chr3:15751562 Lcy3g0801 Lcy-Chr3:28994657 1.72E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0801 - - - 0.0