Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0803 ATGGCTTGGTTTTTTGCCTTTCTCCTCTTCTTCTTTATCTCTTCTGCCAATGCCTGTGATCGTTGTATTTTTCAATCGAAGGCTGCTCACTACTATGAGGATTCACCTACTACATATGGAGGTGCATGTGGGTATGGAAACTTGGCCTTGGAAATGTACCAAGGGTATTTTGCAGCTGCTGTTCCTTCTATTTACCGAGAAGGAGTAGGGTGTGGTGCTTGCTATCAGATAAGATGCAAGAATGCAACTTTATGTAACACGGAAGGGACCAAAGTAGTTGTGACAGATCGAAATGCTGATAATAGAACAGGTTTTGTTCTCAGTAAAAAAGCTTTTTCTGCTATGGCTTTAATGGGTCGAGGTCAAGAACTTTTGAAAACTGGAATTGTTGACGTGGAATACAAGAGGATACCTTGTGAATACAATAAAAATTTATTAATACAAGTTGTAGAATGGAGCCACAAGCCATATTATTTGGCTATTAAATTCTTGTACCAAGGAGGCCAAACCGACATAACAAGAGTCTACATAACAGCTCAGGATGGTTCTGGTGGCGGGCAATACATGAATAGAAACTATGGACCTATTTGGGATACCAATAATGTACCTGCAGGGGCCATTAAGCTAGTGGCATCGGTAATTTCAGGAATACGTGAAGGAAAGGGGCCAATCATAATACATAATGCACTCCCTGCTGATTGGAAAAATGGAGAGATTTATGATACTGGAATTAAAATAAGGGATGTCGCTTCTGAATATTGCAATCCTCAGCAATGTGGTGACCAACCGTGGAATTGA 798 40.48 MAWFFAFLLFFFISSANACDRCIFQSKAAHYYEDSPTTYGGACGYGNLALEMYQGYFAAAVPSIYREGVGCGACYQIRCKNATLCNTEGTKVVVTDRNADNRTGFVLSKKAFSAMALMGRGQELLKTGIVDVEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITRVYITAQDGSGGGQYMNRNYGPIWDTNNVPAGAIKLVASVISGIREGKGPIIIHNALPADWKNGEIYDTGIKIRDVASEYCNPQQCGDQPWN 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29055596 29057207 - Maker00015000 Lcy3g0803 627995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0803 265 SUPERFAMILY PHL pollen allergen 150 241 IPR036749 -
Lcy3g0803 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lcy3g0803 265 SMART dpbb_1 58 134 IPR007112 -
Lcy3g0803 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lcy3g0803 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lcy3g0803 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy3g0803 265 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576(InterPro)
Lcy3g0803 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lcy3g0803 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 242 IPR007117 -
Lcy3g0803 265 PANTHER EXPANSIN-B3 7 248 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0803 265 Gene3D - 13 140 IPR036908 -
Lcy3g0803 265 Pfam Expansin C-terminal domain 154 205 IPR007117 -
Lcy3g0803 265 Gene3D - 141 246 IPR036749 -
Lcy3g0803 265 Pfam Lytic transglycolase 59 134 IPR009009 -
Lcy3g0803 265 CDD DPBB_EXLA_N 14 141 - -
Lcy3g0803 265 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0801 Lcy-Chr3:28994657 Lcy3g0803 Lcy-Chr3:29055596 5.99E-170 dispersed
Lcy3g0803 Lcy-Chr3:29055596 Lcy3g0807 Lcy-Chr3:29098667 6.02E-127 dispersed
Lcy3g0803 Lcy-Chr3:29055596 Lcy3g0804 Lcy-Chr3:29059405 4.06E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0803 - - - 0.0