Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0804 ATGTACAAGGAGCTGACGAGGAAAACCGGGAAAAAATCGGGCTGGGAGATGGACCCAGGAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGGAGGGGCCGGGTTTTCGGCCCGTCCAACTCCGTTTGGTCCCTTCCGCCTCTAGCCGCCCCGGTTCCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAATCCTAGGAGCATGAGCAGCATCATTCTCCTTGCTTCTTCCTCACATACACTCATCAAACACAATCAGTTTCCTTCTCTTGATATGGCTTTGTTTGTTGGCTATCTTTTTCTCCTCTTCGTCTCGTGTGCCACGGCTTGTGATCGTTGTCTTCACCAATCTAAAGCTAGCCATTATTACGACACACCTACTTCATATGGAGGAGCATGTGGTTATGGTAACTTGGCATTGGAATTCTCCAATGGTTTTTTTGCTGCTGGTGTACCTTCTCTGTATAAACAGGGAGCTGGTTGTGGCGCTTGCTACCAAGTAAGGTGTAAAAATAGAAGGCTATGCAACACAGTAGGAACAAAAGTGGTGTTAACAGATCAAAATAATGATAATGTAACTGACCTTGTTCTTAGTAAAAAGGCTTTCTTCACCATGGCTCTCAATGGCAAAGGTGGGGACTTGTTGAATCTTGGAGTTATTGATGTAGAATACAAGAGGGTGCCTTGTGACTACAAAAATAGAAATTTGTTAGTGCGGGTGGAAGAATCAAGTTATAATCCATTCTACTTGGCGGTTAAATTCTTATACCAAGGTGGCCAAACAGATATGGTAGCAGTCGACATAGCTCAAGCTGGCACCTCTAATTGGAGTCATATGAAAAGAAACTATGGAGCTGTTTGGGAAACTAACGACATACCTGAAGGAGCACTACAATTGAGGATGGTGGTGACTTCAGGATATGATGGAAAGTGGGTTTGGGCAAAATCTGTGCTTCCTGCTGATTGGAAAACTGGAGCAATTTATGACACTGGAGTTCAAATCAGCGATATTGCCAAAGAGAGTTGTCCTCCTTGGCAATGCGGTGACGTACAATGGAAATGA 1068 45.51 MYKELTRKTGKKSGWEMDPGGETGKWDGPRPEGPGFRPVQLRLVPSASSRPGSAWFVPKRLRIPKNPRSMSSIILLASSSHTLIKHNQFPSLDMALFVGYLFLLFVSCATACDRCLHQSKASHYYDTPTSYGGACGYGNLALEFSNGFFAAGVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSKKAFFTMALNGKGGDLLNLGVIDVEYKRVPCDYKNRNLLVRVEESSYNPFYLAVKFLYQGGQTDMVAVDIAQAGTSNWSHMKRNYGAVWETNDIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKTGAIYDTGVQISDIAKESCPPWQCGDVQWK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29059405 29062050 - Maker00015029 Lcy3g0804 627996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0804 355 PRINTS Major pollen allergen Lol pI signature 241 256 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0804 355 PRINTS Major pollen allergen Lol pI signature 208 223 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0804 355 PRINTS Major pollen allergen Lol pI signature 257 272 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0804 355 PRINTS Major pollen allergen Lol pI signature 308 325 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0804 355 PRINTS Major pollen allergen Lol pI signature 151 162 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0804 355 Gene3D - 106 232 IPR036908 -
Lcy3g0804 355 Pfam Expansin C-terminal domain 240 321 IPR007117 -
Lcy3g0804 355 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 132 236 IPR007112 -
Lcy3g0804 355 SUPERFAMILY PHL pollen allergen 236 331 IPR036749 -
Lcy3g0804 355 MobiDBLite consensus disorder prediction 1 37 - -
Lcy3g0804 355 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 250 332 IPR007117 -
Lcy3g0804 355 MobiDBLite consensus disorder prediction 1 15 - -
Lcy3g0804 355 PRINTS Expansin/Lol pI family signature 131 149 IPR007118 GO:0005576(InterPro)
Lcy3g0804 355 PRINTS Expansin/Lol pI family signature 153 171 IPR007118 GO:0005576(InterPro)
Lcy3g0804 355 PRINTS Expansin/Lol pI family signature 318 332 IPR007118 GO:0005576(InterPro)
Lcy3g0804 355 PRINTS Expansin/Lol pI family signature 219 235 IPR007118 GO:0005576(InterPro)
Lcy3g0804 355 PRINTS Expansin/Lol pI family signature 278 292 IPR007118 GO:0005576(InterPro)
Lcy3g0804 355 Gene3D - 233 336 IPR036749 -
Lcy3g0804 355 Pfam Lytic transglycolase 150 226 IPR009009 -
Lcy3g0804 355 CDD DPBB_EXLA_N 107 233 - -
Lcy3g0804 355 SUPERFAMILY Barwin-like endoglucanases 102 234 IPR036908 -
Lcy3g0804 355 PANTHER EXPANSIN-B3 102 338 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2325 Lcy-Chr1:36285431 Lcy3g0804 Lcy-Chr3:29059405 1.15E-167 dispersed
Lcy2g1325 Lcy-Chr2:14666045 Lcy3g0804 Lcy-Chr3:29059405 5.04E-122 dispersed
Lcy3g0798 Lcy-Chr3:28901480 Lcy3g0804 Lcy-Chr3:29059405 1.98E-129 dispersed
Lcy3g0800 Lcy-Chr3:28963024 Lcy3g0804 Lcy-Chr3:29059405 7.95E-156 dispersed
Lcy3g0804 Lcy-Chr3:29059405 Lcy3g0806 Lcy-Chr3:29068964 1.50E-173 dispersed
Lcy3g0803 Lcy-Chr3:29055596 Lcy3g0804 Lcy-Chr3:29059405 4.06E-114 tandem
Lcy3g0804 Lcy-Chr3:29059405 Lcy3g0805 Lcy-Chr3:29063521 2.41E-15 tandem
Lcy12g1907 Lcy-Chr12:40370292 Lcy3g0804 Lcy-Chr3:29059405 6.16E-56 transposed
Lcy1g2098 Lcy-Chr1:28223781 Lcy3g0804 Lcy-Chr3:29059405 6.16E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0804 - - - 0.0