Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0806 ATGTGTTTTCTCGAGTCGAATATCCCTCCGACGAGCAACCTCGTCAACGACAGGGTAACCGCAATTCGTGATTTCGTCGCAGAAGCAGATGAGTTTTTTATTCTATTATATGGTGCTCTCTCTCAGTTTTTCTCTCTAACTCTCAATCTCTCTCTCCCTCTCGTTTCTTGTTGTTTCCACGGGCAGAGGTCTCCAATTCACAAGTCTAACGCTCAACAAGCTTCTCTGACGAGCGGCAACGCAGACAACGACGATCTAGGTCGTTTTTCGGCATTTTCAGCGAGATTTAGCAGTGGGTCTTGGAGTTTCGTTGATTCCCAGCATTTCCAATGTGGCTTGCTTAAAAGTATTGGAGCTAAGGAAATTGATTTAGAATTTATAAATATCATCATCCTCCTCCCTTCTCCCTCACACTCATCATCCACACAACCATCAAATAATTCCCTAAGCAAAATGGCTTGGTTTCTCAGCTTTCTCTTTCTCTTTTTCATCTCTTATGTTAGTGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGTCATCTTTATGAATCCCCTACTACATATGGGGGAGCATGTGGTTATGGCAACTTAGCATTGCAGTTCTCTAATGGCTTCTTTGCTGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGTGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTCTGCAACACAGTAGGGACTAAGGTAGTGTTGACAGATCAAAATAATGACAACGTAACAGACCTTGTTCTTAGTCAAAGGGCTTTCTTTACCATGGCTCTCAACGGCAAAGGTGCAGATCTTTTGAATCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGCCTTGTCAATATCCTAGTAGAAATTTGTTAGTGCGAGTGGAAGAATCAAGTTACAATCCATTCAAATTGGCAATTAAATTTTTCTATCAAGGTGGCCAAACAGATATTGTTGCTGTTGATATAGCTCAGGTTGGAACGTCCGAGTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGATACAGACAATGTACCTGAAGGCGCATTACAATTGAGAATGGTGGTAACTTCAGGATATGATGGGAAATGGGTTTGGGCAAAGTCTGTGCTTCCTGCTAATTGGGGAGTTGGGGCGATCTATGACACTGGAGTTCAAATCAACGATATTGCCAAAGAAAGTTGCCCTCCATGGCAATGTGGTGATGCACAATGGAAATAA 1242 42.27 MCFLESNIPPTSNLVNDRVTAIRDFVAEADEFFILLYGALSQFFSLTLNLSLPLVSCCFHGQRSPIHKSNAQQASLTSGNADNDDLGRFSAFSARFSSGSWSFVDSQHFQCGLLKSIGAKEIDLEFINIIILLPSPSHSSSTQPSNNSLSKMAWFLSFLFLFFISYVSACDRCVYQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSQRAFFTMALNGKGADLLNLGVVDVEYKRVPCQYPSRNLLVRVEESSYNPFKLAIKFFYQGGQTDIVAVDIAQVGTSEWSHMKRSYGAVWDTDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWGVGAIYDTGVQINDIAKESCPPWQCGDAQWK 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29068964 29075111 - Maker00013850 Lcy3g0806 627998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0806 413 Pfam Lytic transglycolase 209 284 IPR009009 -
Lcy3g0806 413 SUPERFAMILY PHL pollen allergen 294 389 IPR036749 -
Lcy3g0806 413 PRINTS Expansin/Lol pI family signature 277 293 IPR007118 GO:0005576(InterPro)
Lcy3g0806 413 PRINTS Expansin/Lol pI family signature 336 350 IPR007118 GO:0005576(InterPro)
Lcy3g0806 413 PRINTS Expansin/Lol pI family signature 211 229 IPR007118 GO:0005576(InterPro)
Lcy3g0806 413 PRINTS Expansin/Lol pI family signature 376 390 IPR007118 GO:0005576(InterPro)
Lcy3g0806 413 PRINTS Expansin/Lol pI family signature 189 207 IPR007118 GO:0005576(InterPro)
Lcy3g0806 413 SUPERFAMILY Barwin-like endoglucanases 161 292 IPR036908 -
Lcy3g0806 413 CDD DPBB_EXLA_N 165 291 - -
Lcy3g0806 413 Pfam Expansin C-terminal domain 298 379 IPR007117 -
Lcy3g0806 413 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 308 390 IPR007117 -
Lcy3g0806 413 Gene3D - 292 395 IPR036749 -
Lcy3g0806 413 Gene3D - 167 290 IPR036908 -
Lcy3g0806 413 PANTHER EXPANSIN-B3 158 396 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0806 413 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 190 294 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0804 Lcy-Chr3:29059405 Lcy3g0806 Lcy-Chr3:29068964 1.50E-173 dispersed
Lcy3g0806 Lcy-Chr3:29068964 Lcy3g0816 Lcy-Chr3:29376320 2.57E-190 dispersed
Lcy3g0806 Lcy-Chr3:29068964 Lcy3g0807 Lcy-Chr3:29098667 1.83E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0806 - - - 0.0