Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0807 ATGTCTGGGTTTCTCACCTTTCTCCTTTTCTTGCTCGTCTCTTCTACTACTGCTTCGTTTCCTCCGTGTAATCGTTGTGTTCGTCAATCCAAAGCTGCTCATTACTACGAAGATTCACCGACTACATATGGAGGTGCTTGTGGTTATGGAAATTTGGCATTGGAAATATCCCAAGGGTACTTTGCAGCTGCTACATCTTCCCTTTACAGAGGAGGAGTAGGTTGTGGTGCTTGCTATCAGGTAAGATGCAAGGACAAACGTCTGTGCAATACAGCAGGGGCTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTATGCGATGGCTTTAAAAGGAAAAGGCCAACAACTTCTAAATATCGGACTCGTTGACGTAGAATACAAGAGGATACCTTGTGAATACAAAAATAAAAATTTGTTGGTGCAAGTGGTAGAATGGAGCCACAAGCCATACTATTTGGCCATCAAATTCCTATACCAAGGAGGTCAAACAGACATACAAGCAGTTAACATAGCTCAGGTTGGTTTTCCAAAATGGCGTCCCATGAAAAGAAATTATTTAGCTATATGGGATATCAATTCTGTGCCTGAAGGAGCTTTACAATTGAGAGTGGTAGTAACTTCAAGATACGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCTGCTGATTGGAAAAATGGAGAAATTTACGATACTGGAGTTCAAATCAACGATATTGCTCTAGAATATTGCGCTCCTTGGCAATGCGGCGATGGACAATGGAAATAA 807 40.27 MSGFLTFLLFLLVSSTTASFPPCNRCVRQSKAAHYYEDSPTTYGGACGYGNLALEISQGYFAAATSSLYRGGVGCGACYQVRCKDKRLCNTAGAKIVLTDQNNDNRTDIVLSKKAFYAMALKGKGQQLLNIGLVDVEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGFPKWRPMKRNYLAIWDINSVPEGALQLRVVVTSRYDNGKWIWAGSVLPADWKNGEIYDTGVQINDIALEYCAPWQCGDGQWK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29098667 29100124 - Maker00013618 Lcy3g0807 627999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0807 268 Gene3D - 15 144 IPR036908 -
Lcy3g0807 268 SUPERFAMILY Barwin-like endoglucanases 18 147 IPR036908 -
Lcy3g0807 268 Pfam Lytic transglycolase 63 136 IPR009009 -
Lcy3g0807 268 SUPERFAMILY PHL pollen allergen 155 244 IPR036749 -
Lcy3g0807 268 CDD DPBB_EXLA_N 23 145 - -
Lcy3g0807 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Lcy3g0807 268 PANTHER EXPANSIN-B3 8 251 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0807 268 Pfam Expansin C-terminal domain 159 234 IPR007117 -
Lcy3g0807 268 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
Lcy3g0807 268 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Lcy3g0807 268 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Lcy3g0807 268 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Lcy3g0807 268 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Lcy3g0807 268 Gene3D - 145 250 IPR036749 -
Lcy3g0807 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 245 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1326 Lcy-Chr2:14674245 Lcy3g0807 Lcy-Chr3:29098667 2.42E-103 dispersed
Lcy3g0803 Lcy-Chr3:29055596 Lcy3g0807 Lcy-Chr3:29098667 6.02E-127 dispersed
Lcy3g0807 Lcy-Chr3:29098667 Lcy3g0816 Lcy-Chr3:29376320 8.62E-138 dispersed
Lcy3g0806 Lcy-Chr3:29068964 Lcy3g0807 Lcy-Chr3:29098667 1.83E-132 tandem
Lcy3g0807 Lcy-Chr3:29098667 Lcy3g0808 Lcy-Chr3:29145720 6.07E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0807 - - - 0.0