Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0808 ATGGCTTGGTTTCTCGGGTTTCTCTTCCTCTTTTTCATTTCTTCTACTAATGCTTGTGACCGTTGTGTTCATTTGTCTAAAGCTAGTCGCCTTTTTGAATCACCTACAACATATGGAGGAGCATGTGGTTATGGAGACTTGGCGTTGAAATTCTCCAAAGGCTATTTTGCTGCTGCTGTGCCTTCCCTTTACAAAGAAGGAGCTGGTTGTGGTGCCTGTTATCAGGTAAGGTGCAAAAATAGAAGACTTTGCAATACAATAGGAACAAAAGTGGTGTTGACAGATCAAAATAACGATAACACAACTGATCTTGTTCTTAGTAAGAGGGCTTTTTTTACAATGGCCCTTCGTGGAAAAGGTGGGGACTTGTTGAATCTTGGAGTTATTGATGTTGAATACAAGAGGGTACCTTGCGAATACAAAAATAAAAATTTGTTAGTGCGAGTGGAAGAATCAAGTTATAATCCAATCTACTTGGCAATTAAATTTTTGTACCAAGGTGGCCAAACAGATATTGTGGCTGTAGACATAGCTCAAGTCGGTACATCTGAGTGGAGTCATATGAAAAGAAACTATGGTGCTATATGGGATACTAACAATGTACCTGAAGGAGCATTGCAACTAAGGATGGTGATAACTTCAGGATATGATGGTAAATGGGTATTGGCAAACTCCGTGCTTCCTGCTAATTGGAAAACTGGAAAAATTTATGACAGTAGAGTTCAGATCAATGACACTGTTAAAGAGAGTTGTCCTCCATGGCAATGTGGTGATGGGCAATGGAAATGA 789 39.67 MAWFLGFLFLFFISSTNACDRCVHLSKASRLFESPTTYGGACGYGDLALKFSKGYFAAAVPSLYKEGAGCGACYQVRCKNRRLCNTIGTKVVLTDQNNDNTTDLVLSKRAFFTMALRGKGGDLLNLGVIDVEYKRVPCEYKNKNLLVRVEESSYNPIYLAIKFLYQGGQTDIVAVDIAQVGTSEWSHMKRNYGAIWDTNNVPEGALQLRMVITSGYDGKWVLANSVLPANWKTGKIYDSRVQINDTVKESCPPWQCGDGQWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29145720 29146827 - Maker00014757 Lcy3g0808 628000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0808 262 Gene3D - 16 139 IPR036908 -
Lcy3g0808 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lcy3g0808 262 Gene3D - 140 244 IPR036749 -
Lcy3g0808 262 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0808 262 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0808 262 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0808 262 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0808 262 PANTHER EXPANSIN-B3 9 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0808 262 CDD DPBB_EXLA_N 14 140 - -
Lcy3g0808 262 SUPERFAMILY Barwin-like endoglucanases 16 142 IPR036908 -
Lcy3g0808 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Lcy3g0808 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Lcy3g0808 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Lcy3g0808 262 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Lcy3g0808 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lcy3g0808 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lcy3g0808 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Lcy3g0808 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Lcy3g0808 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0808 Lcy-Chr3:29145720 Lcy3g0816 Lcy-Chr3:29376320 1.04E-171 dispersed
Lcy3g0807 Lcy-Chr3:29098667 Lcy3g0808 Lcy-Chr3:29145720 6.07E-138 tandem
Lcy3g0808 Lcy-Chr3:29145720 Lcy3g0809 Lcy-Chr3:29194590 1.29E-129 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0808 - - - 0.0