Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0809 ATGGCTTGGTTTCTTAGCTTGTTCTTCTTATTTCTCGTCTCTTCTGCAACTGCTTGCGATCGTTATGGAGGAGCATGTGGTTATGGAAATTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGTTGTGCCTTCTCTCTACAAAAATGGAGCGGGTTGTGGTGCATGTTTTCAAGTAAGATGTAAAGACAAAAGTTTGTGCAATACATCGGGAACTAAAGTAGTATTGACAGATCAAAATTATGATACTAGAACAAATTTTGTTCTCAGTAGAAAAGCTTTTTCTGCTATGGCTTTAAACGGAAAAGGACAAGACCTTTTGAATTCAGGGATTGTGGATATCGAATATAAGAGGATACCTTGTGTATACAAAAACAGAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCCAACTATTTAGCCATTAAACTTTTATACCAAGGTGGCCAAACCGAAGTAGTGGCTCTTGAAATAGCTAAGGTTGATTCGTACGATTGGGTGAGTTTAAAGAGAAACTATGGAGCTATTTGGGATACTAATAAAGTACCAATAGGCGCAATACAAATGAGAATGGTAATAACTTCCGGATACGATGGAAAATGGGTGTGGGCAAAATATGTGCTTCCTGCTGACTGGAAAACTGGGATCATTTACGATATGGGAGTTCAAATTGATGATATTGCTAAAGAGAGTTGTCCTGCATCACGGTGCGGTGATTTACCATGGAAATGA 741 38.33 MAWFLSLFFLFLVSSATACDRYGGACGYGNLALEFTNGYFSAVVPSLYKNGAGCGACFQVRCKDKSLCNTSGTKVVLTDQNYDTRTNFVLSRKAFSAMALNGKGQDLLNSGIVDIEYKRIPCVYKNRNLAVRVEESSYNPNYLAIKLLYQGGQTEVVALEIAKVDSYDWVSLKRNYGAIWDTNKVPIGAIQMRMVITSGYDGKWVWAKYVLPADWKTGIIYDMGVQIDDIAKESCPASRCGDLPWK 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29194590 29195803 - Maker00013746 Lcy3g0809 628001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0809 246 Pfam Expansin C-terminal domain 130 212 IPR007117 -
Lcy3g0809 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 23 127 IPR007112 -
Lcy3g0809 246 SMART dpbb_1 41 117 IPR007112 -
Lcy3g0809 246 Gene3D - 11 122 IPR036908 -
Lcy3g0809 246 PRINTS Expansin/Lol pI family signature 169 183 IPR007118 GO:0005576(InterPro)
Lcy3g0809 246 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576(InterPro)
Lcy3g0809 246 PRINTS Expansin/Lol pI family signature 22 40 IPR007118 GO:0005576(InterPro)
Lcy3g0809 246 PRINTS Expansin/Lol pI family signature 110 126 IPR007118 GO:0005576(InterPro)
Lcy3g0809 246 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Lcy3g0809 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 141 223 IPR007117 -
Lcy3g0809 246 SUPERFAMILY Barwin-like endoglucanases 16 125 IPR036908 -
Lcy3g0809 246 PRINTS Major pollen allergen Lol pI signature 199 216 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0809 246 PRINTS Major pollen allergen Lol pI signature 132 147 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0809 246 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0809 246 PRINTS Major pollen allergen Lol pI signature 99 114 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy3g0809 246 PANTHER EXPANSIN-B3 18 229 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0809 246 Gene3D - 124 227 IPR036749 -
Lcy3g0809 246 Pfam Lytic transglycolase 42 117 IPR009009 -
Lcy3g0809 246 SUPERFAMILY PHL pollen allergen 127 222 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1144 Lcy-Chr11:33797473 Lcy3g0809 Lcy-Chr3:29194590 2.02E-149 dispersed
Lcy3g0809 Lcy-Chr3:29194590 Lcy3g0816 Lcy-Chr3:29376320 1.04E-130 dispersed
Lcy3g0808 Lcy-Chr3:29145720 Lcy3g0809 Lcy-Chr3:29194590 1.29E-129 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0809 - - - 0.0