Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0816 ATGGCTTGGTTTCTCGTTTTTCTCTTTCTCTTCTTCATCTCTTCTGTTAGTGCTTGTGATCGATGTGTTTATCAATCTAAAGCTAGTCATCTTTATGAATCCCCTACTACATATGGGGGAGCATGTGGTTATGGCAACTTAGCATTGCAGTTCTCTAATGGCTTCTTTGCTGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGTGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTCTGCAACACAGTAGGGACTAAAGTAGTGTTGACAGATCAAAATAATGACAATGTAACAGACCTTGTTCTTAGTCAAAAGGCTTTCTTTACCATGGCTCTCAATGGCAAAGGTGCAGATCTTTTGAACCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGCCTTGTCAATATCCTTATAGAAATTTGTTAGTGCAAGTGGAAGAATCAAGTTACAATCCATTCAAACTGGCAATTAAATTTTTCTATCAAGGTGGCCAAACAGATATTGTTGCTGTTGATATAGCTCAGGTTGGAACCTCCGAGTGGAGCCATATGAAGAGAAGTTATGGAGTTGTTTGGGACACAGACAATGTACCTGAAGGCGCATTACAATTGAGAATGGTGGTAACTTCAGGATACGATGGGAAATGGGTTTGGGCAAAGTCTGTGCTTCCTGCTAATTGGAGAGCTGGAGTGATCTATGACACTGGAGTTCAAATCAACGATATTGCCAAAGAAAGTTGTCCTCCATGGCAATGTGGTGATGGACAATGGAAATAA 789 40.81 MAWFLVFLFLFFISSVSACDRCVYQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSQKAFFTMALNGKGADLLNLGVVDVEYKRVPCQYPYRNLLVQVEESSYNPFKLAIKFFYQGGQTDIVAVDIAQVGTSEWSHMKRSYGVVWDTDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGVIYDTGVQINDIAKESCPPWQCGDGQWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29376320 29377574 + Maker00014988 Lcy3g0816 628008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0816 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Lcy3g0816 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lcy3g0816 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Lcy3g0816 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lcy3g0816 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Lcy3g0816 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lcy3g0816 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lcy3g0816 262 PANTHER EXPANSIN-B3 7 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0816 262 SUPERFAMILY Barwin-like endoglucanases 10 141 IPR036908 -
Lcy3g0816 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Lcy3g0816 262 CDD DPBB_EXLA_N 14 140 - -
Lcy3g0816 262 Gene3D - 14 139 IPR036908 -
Lcy3g0816 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Lcy3g0816 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Lcy3g0816 262 Gene3D - 142 244 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0806 Lcy-Chr3:29068964 Lcy3g0816 Lcy-Chr3:29376320 2.57E-190 dispersed
Lcy3g0807 Lcy-Chr3:29098667 Lcy3g0816 Lcy-Chr3:29376320 8.62E-138 dispersed
Lcy3g0808 Lcy-Chr3:29145720 Lcy3g0816 Lcy-Chr3:29376320 1.04E-171 dispersed
Lcy3g0809 Lcy-Chr3:29194590 Lcy3g0816 Lcy-Chr3:29376320 1.04E-130 dispersed
Lcy3g0816 Lcy-Chr3:29376320 Lcy3g0821 Lcy-Chr3:29507413 2.39E-115 dispersed
Lcy3g0816 Lcy-Chr3:29376320 Lcy3g0818 Lcy-Chr3:29435243 2.02E-114 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0816 - - - 0.0