Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0819 ATGGCTCTCTATCTCGGTCTTTTCTTGTTTCTTGTTTCTTCTGCCGCTGCTTGTGATCGTTGTGTTCGTCAATCCAAAACTGCTTATTACTATGATGATACTCCCATTCAACATGGGGCATGTGGATATGGCCCTTTGGCATTTGAATTATCCAATGGATATGTTGCTGGTATTGTACCTTCCCTTTATAAAGAGGGGGCTGGATGTGGTGCTTGTTTCCAGGTGAGGTGCAAGGACAAAAGATTTTGCACCACCGTTGGAACTAAAGTGATTGCAACAGATCAAAATTACGATAACAGATATGACTTTGTCTTTAGTAGGAAAGCATACTCTGCAATGGCTTTAAAGAATAAGGCTAAAGAACTTTTGAATCTGGGAACAGTTGATATCGAGTACAAGAGGATACCTTGTACCTACCCCAACAAGAATTTGTTAGTGCGAGTGGAGGAATGGAGTCAAAAGCCATACTACTTGGCTATTAAATTCCTTTACCAAGGTGGCCAAACAGAAATAAAAGCAGTTGAAATAGCTGAGGTTGGTTCATGGGATTGGGAACCAATGAAGAGAAACTATGGTGCCATTTGGGATACAAACAAACAACTCGGGGGAGCTTTGCAATTGAAGATAACGGTAGCTTCTGGGGACAATAATGAGAATACATATTGGACAAATTACGATCTTCCTGATGATTGGCAAAATGGACAGATCTATGATACTGGAATTCAAATCGATGACATTGCTAAAGAAACTTGCCCACGAAAGCAGTGTGGTGATTTGCCATGGAAATAA 789 40.56 MALYLGLFLFLVSSAAACDRCVRQSKTAYYYDDTPIQHGACGYGPLAFELSNGYVAGIVPSLYKEGAGCGACFQVRCKDKRFCTTVGTKVIATDQNYDNRYDFVFSRKAYSAMALKNKAKELLNLGTVDIEYKRIPCTYPNKNLLVRVEEWSQKPYYLAIKFLYQGGQTEIKAVEIAEVGSWDWEPMKRNYGAIWDTNKQLGGALQLKITVASGDNNENTYWTNYDLPDDWQNGQIYDTGIQIDDIAKETCPRKQCGDLPWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29455016 29456574 - Maker00013718 Lcy3g0819 628011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0819 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 239 IPR007117 -
Lcy3g0819 262 SUPERFAMILY PHL pollen allergen 142 238 IPR036749 -
Lcy3g0819 262 PANTHER EXPANSIN-B3 8 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0819 262 Pfam Lytic transglycolase 59 132 IPR009009 -
Lcy3g0819 262 Pfam Expansin C-terminal domain 152 214 IPR007117 -
Lcy3g0819 262 Gene3D - 11 138 IPR036908 -
Lcy3g0819 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Lcy3g0819 262 Gene3D - 139 243 IPR036749 -
Lcy3g0819 262 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
Lcy3g0819 262 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576(InterPro)
Lcy3g0819 262 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576(InterPro)
Lcy3g0819 262 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Lcy3g0819 262 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576(InterPro)
Lcy3g0819 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Lcy3g0819 262 CDD DPBB_EXLA_N 13 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1145 Lcy-Chr11:33820561 Lcy3g0819 Lcy-Chr3:29455016 8.34E-160 dispersed
Lcy11g1146 Lcy-Chr11:33830296 Lcy3g0819 Lcy-Chr3:29455016 4.61E-157 dispersed
Lcy3g0819 Lcy-Chr3:29455016 Lcy3g0821 Lcy-Chr3:29507413 2.20E-139 dispersed
Lcy3g0818 Lcy-Chr3:29435243 Lcy3g0819 Lcy-Chr3:29455016 8.56E-109 tandem
Lcy3g0819 Lcy-Chr3:29455016 Lcy3g0820 Lcy-Chr3:29504202 2.32E-155 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0819 - - - 0.0