Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0820 ATGCACAAACACATCATCAAAATCTTCGAAATCAATTGGCTTTTCAAAGCCTATATAAGCATCCATTCTTGTTGCTTTGTTTCTCATCCCCATCATTTCCTTACAAAAAAAAGCAAAATGGCTCTCTATCTCGGTCTTCTCTTCTTTCTTGTTTCTTCCGCTGCTGCAGCTTGTGATCGTTGCGTTCATCAATCTAAAGCTGCTTATTACTATGATGATTCACCTATTCAACGTGGGGCTTGTGGGTATGGTCCATTGGCATTTGAGTTATCCAATGGGTACGTCGGTGGTGTTGTGCCTTCCCTTTATAAACAAGGAGCTGGATGTGGTGGTTGTTTCCTGGTAAGGTGCAAGAACAATAGACTCTGCAACAATGCTGGAACTAAAGTGATTGTGACAGATCAAAATTACGATAGCAGATATGACTTTGTCCTCAGTAAGAAAGCCTACTCTAAAATGGCTTTGAGGAATAAGGCCACAGAACTTTTGAAGCTAGGAACAGTTGACGTGGAATACAAGAGGATACCTTGTTTGTATGGAAATAGGACTTTGTTAGCGCGAGTGGAGGAATGGAGTCAGAAGCCATACTACTTGGCCATTAAATTCCTTTACCAAGGTGGTCAGACAGAAATCAAAAGAGTTGAAATAGCTGAGGCTGGTTCAACGGAATGGGAACCAATGAAGAGAAACTATGGTGCTATTTGGGATACGAACAAACAACTCGAAGGAGCCTTGCAATTGAAGATAGTCATAGCTTATGGGTACAAGAATGAGAAAACATATTTGGCAACTTACGATCTCCCCGGTGATTGGCAAAATGGAGAGATCTATGATACTGGAATTGAAATTCAATTCAATGACATTTCTCAAGAAGTTTGCCCACAAAACAAGTGTGCTGATTTGCCATGGAATTGA 915 40.66 MHKHIIKIFEINWLFKAYISIHSCCFVSHPHHFLTKKSKMALYLGLLFFLVSSAAAACDRCVHQSKAAYYYDDSPIQRGACGYGPLAFELSNGYVGGVVPSLYKQGAGCGGCFLVRCKNNRLCNNAGTKVIVTDQNYDSRYDFVLSKKAYSKMALRNKATELLKLGTVDVEYKRIPCLYGNRTLLARVEEWSQKPYYLAIKFLYQGGQTEIKRVEIAEAGSTEWEPMKRNYGAIWDTNKQLEGALQLKIVIAYGYKNEKTYLATYDLPGDWQNGEIYDTGIEIQFNDISQEVCPQNKCADLPWN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29504202 29505828 - Maker00015327 Lcy3g0820 628012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0820 304 SUPERFAMILY Barwin-like endoglucanases 47 179 IPR036908 -
Lcy3g0820 304 PANTHER EXPANSIN-B3 46 283 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0820 304 Gene3D - 50 177 IPR036908 -
Lcy3g0820 304 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 279 IPR007117 -
Lcy3g0820 304 Gene3D - 180 284 IPR036749 -
Lcy3g0820 304 SUPERFAMILY PHL pollen allergen 187 278 IPR036749 -
Lcy3g0820 304 CDD DPBB_EXLA_N 53 179 - -
Lcy3g0820 304 Pfam Lytic transglycolase 100 172 IPR009009 -
Lcy3g0820 304 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 182 IPR007112 -
Lcy3g0820 304 Pfam Expansin C-terminal domain 193 254 IPR007117 -
Lcy3g0820 304 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576(InterPro)
Lcy3g0820 304 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Lcy3g0820 304 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Lcy3g0820 304 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576(InterPro)
Lcy3g0820 304 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0820 Lcy-Chr3:29504202 Lcy3g0837 Lcy-Chr3:30071104 1.35E-75 dispersed
Lcy3g0819 Lcy-Chr3:29455016 Lcy3g0820 Lcy-Chr3:29504202 2.32E-155 tandem
Lcy3g0820 Lcy-Chr3:29504202 Lcy3g0821 Lcy-Chr3:29507413 6.65E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0820 - - - 0.0