Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0821 ATGGCTCCATTTCTCGTCTTTGTCGGCTTCTTTATTCTCATCTCTTCTGCTACTGCTTGTGATCGATGTATTCATCAATCCAAGGCTGCTTATTACTATAATGATGCACCTATTCCATATGGGGCGTGTGGCTATGGTTCCTTTGCAAATGATTCTTTCAATGGATACATTGCTGGTGTTGTGTCTTCGCTTTACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAAAATAAGAAGCTATGCAGTCCAGTAGGAGCTAAAGTAGTTTTGACGGATCAAAATTATGATAACCGAACCGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGGAATGGCTCGATGGGGGATGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATCGAATACAAGAGGGTACCTTGTGTATACAGAAATAAAAATTTGATGGTCCGAATACAAGAATGGAGCAACAGGCCATATTACTTGGCAATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCGGATTGGGAACCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAGAGTACCTGAAGGAGCACTGCAACTAAGAATAGTGGTTGCTTCAGGATATGATAACGAGAATTGGATCTGGACAAATTTCGAACTTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGAATTCAAATTGCAGATATTGCTAAAGAATTTTGCCCTCTAAGAGAATGTGGGGATCAAATATGGAAATGA 795 39.87 MAPFLVFVGFFILISSATACDRCIHQSKAAYYYNDAPIPYGACGYGSFANDSFNGYIAGVVSSLYKQGAGCGACFQVRCKNKKLCSPVGAKVVLTDQNYDNRTDFVLSRKAFSGMARWGMAQDLLKLGMVDIEYKRVPCVYRNKNLMVRIQEWSNRPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEPLKRNYGAIWDTSRVPEGALQLRIVVASGYDNENWIWTNFELPADWKNGETYDTGIQIADIAKEFCPLRECGDQIWK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29507413 29508760 - Maker00015111 Lcy3g0821 628013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0821 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lcy3g0821 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Lcy3g0821 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lcy3g0821 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lcy3g0821 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lcy3g0821 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy3g0821 264 SUPERFAMILY Barwin-like endoglucanases 11 142 IPR036908 -
Lcy3g0821 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Lcy3g0821 264 PANTHER EXPANSIN-B3 10 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0821 264 Gene3D - 13 139 IPR036908 -
Lcy3g0821 264 Gene3D - 141 245 IPR036749 -
Lcy3g0821 264 Pfam Lytic transglycolase 60 134 IPR009009 -
Lcy3g0821 264 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Lcy3g0821 264 CDD DPBB_EXLA_N 15 141 - -
Lcy3g0821 264 Pfam Expansin C-terminal domain 148 216 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1907 Lcy-Chr12:40370292 Lcy3g0821 Lcy-Chr3:29507413 1.73E-63 dispersed
Lcy3g0816 Lcy-Chr3:29376320 Lcy3g0821 Lcy-Chr3:29507413 2.39E-115 dispersed
Lcy3g0818 Lcy-Chr3:29435243 Lcy3g0821 Lcy-Chr3:29507413 3.28E-116 dispersed
Lcy3g0819 Lcy-Chr3:29455016 Lcy3g0821 Lcy-Chr3:29507413 2.20E-139 dispersed
Lcy3g0821 Lcy-Chr3:29507413 Lcy3g0837 Lcy-Chr3:30071104 1.30E-88 dispersed
Lcy3g0820 Lcy-Chr3:29504202 Lcy3g0821 Lcy-Chr3:29507413 6.65E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0821 - - - 0.0