Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0837 ATGGCTTTGTTTATTTGCCTTCTCTTTTTCTTCCTCGCCTCATCTGTCACCGCATGTGATCGTTGTGTTCACCAATCTAAAGCTGTCTATTTCCCAAATGATTCACCACTTTCATCTGGAACTTGTGGGTATGGCTCCTCAGCACTTGGCTTCCTCGACGGACACCTCGCAGCGGGTGTCCCTTCCCTTTACAAAGAAGGTGTTCGTTGCGGTGCATGTTATCAGATAAGGTGCAAAGAGAAGAAAGTTTGCAGCAGAAGCGGGACCAAAGTAATTTTGACAGATCTGAACGTACACAGCAATAGAACTGATTTTATTTTGAGCAAGAAAGCTTTTTCTGCCATGGCTCACAATGGCCAAGATAAGAATATTTTGAGACGTGGGACTCTCGATGTTGAATACAAGAGGATGCCCTGTGAATACAAAAAACAAAATCTGTCAGTAAGAATTGAAGAATCAAGCCAAAAGCCTCATCACATGGCTGTTAAGTTCCTAAACCAAGGTGGGCAGACAGACATGGTACTCGTTCATCTTCATCCGGTGCATTCGGGCAGAACGGCGTTCATGAGCAGAAGGCATGGAACGGCGGTGTGGGAAACAGAAACGGCGCCGGAAGCGGCGGTGGTGTTTCAGATAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTCAGGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGATCTTGGAGTTCAGATCGATGCCATTGCCAAAGGGCAAGAGAGTTGCAGACTGTGCGATGAAGGGAATTGGTGA 792 48.23 MALFICLLFFFLASSVTACDRCVHQSKAVYFPNDSPLSSGTCGYGSSALGFLDGHLAAGVPSLYKEGVRCGACYQIRCKEKKVCSRSGTKVILTDLNVHSNRTDFILSKKAFSAMAHNGQDKNILRRGTLDVEYKRMPCEYKKQNLSVRIEESSQKPHHMAVKFLNQGGQTDMVLVHLHPVHSGRTAFMSRRHGTAVWETETAPEAAVVFQIRVISGFDGMWVRAERAVPADWKPGMIYDLGVQIDAIAKGQESCRLCDEGNW 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30071104 30076372 - Maker00015140 Lcy3g0837 628029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0837 263 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Lcy3g0837 263 PANTHER EXPANSIN-B3 4 245 - -
Lcy3g0837 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lcy3g0837 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lcy3g0837 263 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Lcy3g0837 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lcy3g0837 263 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Lcy3g0837 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Lcy3g0837 263 CDD DPBB_EXLA_N 14 141 - -
Lcy3g0837 263 Gene3D - 13 140 IPR036908 -
Lcy3g0837 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Lcy3g0837 263 Gene3D - 141 245 IPR036749 -
Lcy3g0837 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Lcy3g0837 263 Pfam Lytic transglycolase 57 134 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0820 Lcy-Chr3:29504202 Lcy3g0837 Lcy-Chr3:30071104 1.35E-75 dispersed
Lcy3g0821 Lcy-Chr3:29507413 Lcy3g0837 Lcy-Chr3:30071104 1.30E-88 dispersed
Lcy3g0837 Lcy-Chr3:30071104 Lcy4g0096 Lcy-Chr4:1360141 3.85E-31 dispersed
Lcy3g0837 Lcy-Chr3:30071104 Lcy3g0838 Lcy-Chr3:30094253 4.11E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0837 - - - 0.0