Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0838 ATGGAAACTCTTTATAACCTTAAAATCCATTCTCTCTCGAGTGCTCCATTTCAAGGAAAAAAGAAAATGTGTATCTTACTTTCCTCTTTCTTCTTCTTCTTTCTGGTTTCATCTGCCACTGAGTGTGATCGTTGTCCACACCAATCCAAGGCTGCTTATTTCTCCAGGGATTCATCACTTTCATCTGGAGCTTGTGGCTATGGTGCTTCGGCATTGAGCTTCTTTAATGGACACCTTGCAGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTCGATGTGGCGCTTGCTACCAGATTAGATGCAAAAGTAAAGGGCTTTGCTCTAAAGAAGGGACTAGAGTTATTTTGACTGATTTGAATCACAGTAATAAAACTGATTTTGTTTTGAGTAAGAAAGCTTTCTCTGCAATGGCTCAAAAGGGCAAAGGAAAACAGATTCTGCAACAAGGGATTGTAGATATTGAATATAAGAGGGTTCCATGTGAATATAAAAAACAAAACATGTCAGTGCGGATCCACGAATCAAGCAAAAGACCCCATTACTTGGCCATTACATGGTTATATGTAGGTGGGCAAACAGAAATAGCAGAAGTTCATGTATCACTGGACGGTGCCCTTGTGTCAACTGACATGAGAAGAAGAAAGAATGGGGCAATTTGGGAAGCTGATTCAGTGCCAGAAGGCCAACTGAACTTCCAAATAAGGTTAAGTTCAAGTGATATTATTTTTTTCACATTGCTAGATCTGCCTCAAGATTGGAAACTTGGCTCGATTTATGATACTGGAATTCAAATTCGCCCTAATATTCCAGAAGGGCAAGAGAGTTGTCGTCCATGTGTTGGAGGGCATTGGAATTGA 858 40.56 METLYNLKIHSLSSAPFQGKKKMCILLSSFFFFFLVSSATECDRCPHQSKAAYFSRDSSLSSGACGYGASALSFFNGHLAAGVPSLYKDGARCGACYQIRCKSKGLCSKEGTRVILTDLNHSNKTDFVLSKKAFSAMAQKGKGKQILQQGIVDIEYKRVPCEYKKQNMSVRIHESSKRPHYLAITWLYVGGQTEIAEVHVSLDGALVSTDMRRRKNGAIWEADSVPEGQLNFQIRLSSSDIIFFTLLDLPQDWKLGSIYDTGIQIRPNIPEGQESCRPCVGGHWN 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30094253 30096669 - Maker00014148 Lcy3g0838 628030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0838 285 Pfam Lytic transglycolase 80 156 IPR009009 -
Lcy3g0838 285 PANTHER EXPANSIN-B3 29 265 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy3g0838 285 SUPERFAMILY Barwin-like endoglucanases 31 164 IPR036908 -
Lcy3g0838 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 166 IPR007112 -
Lcy3g0838 285 SUPERFAMILY PHL pollen allergen 167 260 IPR036749 -
Lcy3g0838 285 CDD DPBB_EXLA_N 39 163 - -
Lcy3g0838 285 SMART dpbb_1 80 156 IPR007112 -
Lcy3g0838 285 Gene3D - 163 266 IPR036749 -
Lcy3g0838 285 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576(InterPro)
Lcy3g0838 285 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576(InterPro)
Lcy3g0838 285 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy3g0838 285 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Lcy3g0838 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 261 IPR007117 -
Lcy3g0838 285 Gene3D - 36 162 IPR036908 -
Lcy3g0838 285 Pfam Expansin C-terminal domain 169 240 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0838 Lcy-Chr3:30094253 Lcy4g0096 Lcy-Chr4:1360141 3.38E-31 dispersed
Lcy3g0837 Lcy-Chr3:30071104 Lcy3g0838 Lcy-Chr3:30094253 4.11E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0838 - - - 0.0