Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g0858 ATGGTTATGGAGGATAACGAGAGCTGTGGGAGTAGAGCCTATGACTCCTTGTCGCCGGCGCAGACACGGCAACAGAGGCAGAAGTTTGAGGTATACAATGAGGTTCTACGGCGGCTCAAGGATTCCAACAACCACGAGGCCATTCAGCCTGGTTTCGACGACGAACTATGGGTTCACTTCAATCGCCTTCCTACTCGCGTTGGATCAGGTTTTCAGTTTTGGAGTGGAGAAGAGCGGATTATTATGTATTCGTATTGGCGAGTCGACATTTGTTCTCATGCTCTGTTGAATGAACGGATTCGATATGAGTTTTGCTTTGAAAGTTCTTTCTGCTTTATTGCTTCTGCTAGCAATGCTAATTATGGTCGTACTGAACACTTCCTGAGTTTGCTTTATGAGTTTATTAGCCGTTTAATTCAATGCCTCTGCAGATATGCTCTAGACGTAAATGTGGAGAGGGCTGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCACGATCCTGCAAATCGTCCTGCAATTGAGGTCCGCCTAGTGCAGGTCCAAGCCATTTCTGATAGTAATTCGGCTGATTTTGCTGATTCATACCCTGTAAAAGACACTGATCATAATTCTGCAAATTTATTGAGCAGACAGAGCGTACATCCACCACCTGCCTTTGGATCATCTCCTAACCTTGAAGCCCTGGCCCTTGAAGCTAATAATGCTCAGGATCTGGAGGTTGATCATTCTGTACATGCCAGAACACAGTTTTTCCGGCCGATGCATGAAATAACTTTCTCTACAGATGACAAGCCAAAACTTCTCAGTCAGTTGACCTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCTTTTTCTACTGTTGACGGTTACTCCTTGGACGTTTTTGTAGTTGATGGTTGGCCCTATGAGGCCTATCTGTGCTTAAGCTTGGGCTTCGGTTGTGATAATGTTAAGGGTGAAACAGAGCGATTGAAGACTGCATTGGAGAAGGAAGTCTTACAGGTTGAGAGGCAGGCTTGGCCAAATCATAAATCCTTGTCTCCTGTAGGGGAACGGGATATATCAATTAAATCTGAACCTGATCGGGTGGAAATACCCACGGATGGGACTGATGTATGGGAAATTAATCCTAGACATTTGAAGTTCGAGCATAAAGTCGCATCTGGGTCATATGGAGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTCCTTAAACCTGAACGTGTAAATTCAGATATGCAAAGTGAGTTCGCCCAGGAGGTATACATTATGAGAAAAGTCAGGCATAAGAATGTCGTACAGTTTATTGGTGCATGTACTAAGCCCCCAAGCTTGTGCATCGTAACAGAATTTATGTCTGGCGGTAGTGTCTATGACTATCTACATAAACAAAAGGGCACTTTTAGACTTCCATCCTTGCTCAAGGTAGCCATTGATGTCTCGAAGGGAATGAACTACTTGCACCAAAATAATATCATTCACAGAGATCTAAAGGCTGCCAATCTTCTGATGGATGAAAATGAAGTTGTCAAGGTTGCCGATTTTGGTGTTGCCAGAGTGAAAGCTCAATCAGGAGTTATGACTGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCATAAGGCTGATGTTTTCAGTTTTGGAATTGTCTTGTGGGAGCTGCTAACTGGAAAGCTACCTTATGAATTCCTAACCCCATTACAAGCTGCAGTCGGAGTAGTACAAAAGGGTTTACGGCCTACTATTCCGAAGCACACTAATCCCAAGCTGGCTGAGTTGCTGGAAAAATGTTGGCAGCAAGACCCGTCATGCAGGCCTGACTTCTCTGAAATTATCGATATATTGTTGCAGATAGCTAAGGAAGTTGCTGAAGACGGCGACGAACGACGAAAGGAGAAGAGTGGAGGATTCCTTTCTGTGTTGAGACGAAACCATCACTAA 2004 44.16 MVMEDNESCGSRAYDSLSPAQTRQQRQKFEVYNEVLRRLKDSNNHEAIQPGFDDELWVHFNRLPTRVGSGFQFWSGEERIIMYSYWRVDICSHALLNERIRYEFCFESSFCFIASASNANYGRTEHFLSLLYEFISRLIQCLCRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAISDSNSADFADSYPVKDTDHNSANLLSRQSVHPPPAFGSSPNLEALALEANNAQDLEVDHSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEAYLCLSLGFGCDNVKGETERLKTALEKEVLQVERQAWPNHKSLSPVGERDISIKSEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKPERVNSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLAELLEKCWQQDPSCRPDFSEIIDILLQIAKEVAEDGDERRKEKSGGFLSVLRRNHH 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30969604 30979368 + Maker00013943 Lcy3g0858 628050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g0858 667 FunFam Serine/threonine-protein kinase isoform 1 377 465 - -
Lcy3g0858 667 PANTHER SERINE-THREONINE PROTEIN KINASE 207 639 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy3g0858 667 Pfam Protein tyrosine and serine/threonine kinase 387 635 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 Gene3D Phosphorylase Kinase; domain 1 377 465 - -
Lcy3g0858 667 SMART serkin_6 387 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 SUPERFAMILY Protein kinase-like (PK-like) 370 636 IPR011009 -
Lcy3g0858 667 FunFam serine/threonine-protein kinase HT1 466 656 - -
Lcy3g0858 667 Gene3D Transferase(Phosphotransferase) domain 1 466 659 - -
Lcy3g0858 667 PRINTS Tyrosine kinase catalytic domain signature 498 516 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 PRINTS Tyrosine kinase catalytic domain signature 563 585 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 PRINTS Tyrosine kinase catalytic domain signature 461 474 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 PRINTS Tyrosine kinase catalytic domain signature 607 629 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 PRINTS Tyrosine kinase catalytic domain signature 544 554 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 ProSiteProfiles Protein kinase domain profile. 387 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g0858 667 CDD STKc_MAP3K-like 393 636 - -
Lcy3g0858 667 ProSiteProfiles ACT domain profile. 259 347 IPR002912 -
Lcy3g0858 667 SUPERFAMILY ACT-like 257 306 IPR045865 -
Lcy3g0858 667 Coils Coil 325 345 - -
Lcy3g0858 667 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1341 Lcy-Chr10:36413953 Lcy3g0858 Lcy-Chr3:30969604 6.52E-119 dispersed
Lcy1g0240 Lcy-Chr1:2179730 Lcy3g0858 Lcy-Chr3:30969604 2.11E-41 dispersed
Lcy3g0858 Lcy-Chr3:30969604 Lcy5g1875 Lcy-Chr5:41596723 1.08E-75 dispersed
Lcy4g1554 Lcy-Chr4:39297256 Lcy3g0858 Lcy-Chr3:30969604 6.47E-27 dispersed
Lcy9g0888 Lcy-Chr9:29709833 Lcy3g0858 Lcy-Chr3:30969604 1.33E-28 dispersed
Lcy9g2294 Lcy-Chr9:47336472 Lcy3g0858 Lcy-Chr3:30969604 1.12E-30 dispersed
Lcy3g0858 Lcy-Chr3:30969604 Lcy6g2333 Lcy-Chr6:48118881 2.07E-217 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65775 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g0858 - - - 0.0